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Table 2 Significantly over-represented INO terms among the gene-gene interaction pairs of vaccine-associated sub-network

From: Development and application of an interaction network ontology for literature mining of vaccine-associated gene-gene interactions

INO_ID

Reference term

Enrichment fold

BH *

P-value

Most frequent gene-pair (#)

INO_0000140

Neutralization

6.6

0

IFNG_IL12A (5)**

INO_0000096

induction of production

6.2

0

TNF_IFNG (2)

INO_0000106

gene fusion

5.6

0

CD40LG_CD40 (3)

INO_0000103

accessory regulation

3.9

0

CD8A_CD4 (55)

INO_0000062

Costimulation

3.7

0

CD40_CD8A (4)

INO_0000169

Synergization

3.0

0

CD8A_CD40 (5)

INO_0000089

co-regulation

2.9

0

CD8A_CD40 (5)

MI_0559

glycosylation reaction

2.9

0

IL17A_MUC6 (1)

MI_0195

covalent binding

2.5

0

CSF2_ACPP (2)

MI_0208

genetic interaction

4.9

1.82E-10

CD40LG_CD40 (3)

MI_0571

mRNA cleavage

23.2

2.58E-07

CFI_SUPT5H (1)

MI_0902

RNA cleavage

16.2

2.21E-06

CFI_SUPT5H (1)

MI_0910

nucleic acid cleavage

6.4

6.11E-04

CFI_SUPT5H (1)

GO_0018377

protein myristoylation

2.3

2.68E-03

CD4_S100B (2)

  1. *BH: Benjamini-Hochberg; **IFNG_IL12A (5): represents the IFNG and IL12A gene pair with the ‘neutralization’ interaction keyword in five papers.