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Table 5 Micro-averaged results for each synonym generation method on the CRAFT corpus

From: Gene Ontology synonym generation rules lead to increased performance in biomedical concept recognition

Method

TP

FP

FN

Precision

Recall

F-measure

Baseline (B1)

10,778

6,280

18,669

0.632

0.366

0.464

Baseline (B2)

12,217

7,367

17,230

0.624

0.415

0.498

All external synonyms

12,747

11,682

16,704

0.522

0.433

0.473

Recursive syntactic rules

12,411

7,587

17,036

0.621

0.422

0.502

Recursive syntactic and derivational rules

18,611

10,507

10,836

0.639

0.632

0.636

  1. Bold highlighting indicates the method that produces the highest F-measure