Skip to main content

Volume 2 Supplement 2

Proceedings of the Bio-Ontologies Special Interest Group Meeting 2010

Proceedings

Edited by Larisa Soldatova, Susanna-Assunta Sansone, Susie Stephens and Nigam H Shah

Bio-Ontologies 2010: Semantic Applications in Life Sciences. Go to conference site.

Boston, MA, USA9-10 July 2010

  1. Over the years, the Bio-Ontologies SIG at ISMB has provided a forum for discussion of the latest and most innovative research in the application of ontologies and more generally the organisation, presentation ...

    Authors: Larisa N Soldatova, Susanna-Assunta Sansone, Susie M Stephens and Nigam H Shah
    Citation: Journal of Biomedical Semantics 2011 2(Suppl 2):I1
    Content type: Introduction Published on:

  2. Translational medicine requires the integration of knowledge using heterogeneous data from health care to the life sciences. Here, we describe a collaborative effort to produce a prototype Translational Medici...

    Authors: Joanne S Luciano, Bosse Andersson, Colin Batchelor, Olivier Bodenreider, Tim Clark, Christine K Denney, Christopher Domarew, Thomas Gambet, Lee Harland, Anja Jentzsch, Vipul Kashyap, Peter Kos, Julia Kozlovsky, Timothy Lebo, Scott M Marshall, Jamie P McCusker…
    Citation: Journal of Biomedical Semantics 2011 2(Suppl 2):S1
    Content type: Proceedings Published on:

  3. Ontologies in biomedicine facilitate information integration, data exchange, search and query of biomedical data, and other critical knowledge-intensive tasks. The OBO Foundry is a collaborative effort to esta...

    Authors: Amir Ghazvinian, Natalya F Noy and Mark A Musen
    Citation: Journal of Biomedical Semantics 2011 2(Suppl 2):S2
    Content type: Proceedings Published on:

  4. Key to the success of e-Science is the ability to computationally evaluate expert-composed hypotheses for validity against experimental data. Researchers face the challenge of collecting, evaluating and integr...

    Authors: Alison Callahan, Michel Dumontier and Nigam H Shah
    Citation: Journal of Biomedical Semantics 2011 2(Suppl 2):S3
    Content type: Proceedings Published on:

  5. There is currently a gap between the rich and expressive collection of published biomedical ontologies, and the natural language expression of biomedical papers consumed on a daily basis by scientific research...

    Authors: Paolo Ciccarese, Marco Ocana, Leyla Jael Garcia Castro, Sudeshna Das and Tim Clark
    Citation: Journal of Biomedical Semantics 2011 2(Suppl 2):S4
    Content type: Proceedings Published on:

  6. Text definitions for entities within bio-ontologies are a cornerstone of the effort to gain a consensus in understanding and usage of those ontologies. Writing these definitions is, however, a considerable eff...

    Authors: Robert Stevens, James Malone, Sandra Williams, Richard Power and Allan Third
    Citation: Journal of Biomedical Semantics 2011 2(Suppl 2):S5
    Content type: Proceedings Published on:

  7. The realm of pathological entities can be subdivided into pathological dispositions, pathological processes, and pathological structures. The latter are the bearer of dispositions, which can then be realized b...

    Authors: Stefan Schulz, Kent Spackman, Andrew James, Cristian Cocos and Martin Boeker
    Citation: Journal of Biomedical Semantics 2011 2(Suppl 2):S6
    Content type: Proceedings Published on:

  8. Chronic renal disease is a global health problem. The identification of suitable biomarkers could facilitate early detection and diagnosis and allow better understanding of the underlying pathology. One of the...

    Authors: Simon Jupp, Julie Klein, Joost Schanstra and Robert Stevens
    Citation: Journal of Biomedical Semantics 2011 2(Suppl 2):S7
    Content type: Proceedings Published on:

  9. Interferon-gamma (IFN-Îł) is vital in vaccine-induced immune defense against bacterial and viral infections and tumor. Our recent study demonstrated the power of a literature-based discovery method in extractio...

    Authors: Arzucan Ă–zgĂĽr, Zuoshuang Xiang, Dragomir R Radev and Yongqun He
    Citation: Journal of Biomedical Semantics 2011 2(Suppl 2):S8
    Content type: Proceedings Published on:

  10. Hypotheses are now being automatically produced on an industrial scale by computers in biology, e.g. the annotation of a genome is essentially a large set of hypotheses generated by sequence similarity programs; ...

    Authors: Larisa N Soldatova and Andrey Rzhetsky
    Citation: Journal of Biomedical Semantics 2011 2(Suppl 2):S9
    Content type: Proceedings Published on:

  11. Advances in Natural Language Processing (NLP) techniques enable the extraction of fine-grained relationships mentioned in biomedical text. The variability and the complexity of natural language in expressing s...

    Authors: Adrien Coulet, Yael Garten, Michel Dumontier, Russ B Altman, Mark A Musen and Nigam H Shah
    Citation: Journal of Biomedical Semantics 2011 2(Suppl 2):S10
    Content type: Proceedings Published on:
Submit manuscript

Annual Journal Metrics

  • 2022 Citation Impact
    1.9 - 2-year Impact Factor
    2.6 - 5-year Impact Factor
    0.870 - SNIP (Source Normalized Impact per Paper)
    0.697 - SJR (SCImago Journal Rank)

    2023 Speed
    23 days submission to first editorial decision for all manuscripts (Median)
    265 days submission to accept (Median)

    2023 Usage 
    372,419 downloads
    206 Altmetric mentions

Journal of Biomedical Semantics

ISSN: 2041-1480