Table 1 Currently available data sources in aTag format.
Data source | Description | Source of entities used for tagging |
|---|---|---|
SIDER | Drug side-effect data. Size: 100,000 RDF statements. | DBpedia, ChEBI |
PDSP Ki Database | Receptor-ligand interactions quantified by Ki value, emphasis on data about psychoactive substances. | SenseLab, ChEBI |
PubMed Conclusion sections | Conclusion sections extracted from PubMed abstracts, annotated with Medical Subject Headings. Size: 1,8 million RDF statements. | SKOS version of Medical Subject Headings (MeSH) |
Science Commons Text Annotation Service | Webservice that annotates sentences in PubMed abstracts with aTags | Gene Ontology, ChEBI, some smaller OBO ontologies, Uniprot and NCBI Taxonomy |
aTag Pastebin | User-generated content, mostly curated from scientific texts on the web, created with the aTag bookmarklet. Contains curated statements in diverse domains such as pharmacology and neuroscience. | DBpedia |