TY - STD TI - Nucleic Acids Research. 2009, 37 (DB): (January) ID - ref1 ER - TY - STD TI - Toolbox at the EBI. [http://www.ebi.ac.uk/Tools//] UR - http://www.ebi.ac.uk/Tools// ID - ref2 ER - TY - STD TI - Nucleic Acids Research. 2009, 37 (Web Server): (July) ID - ref3 ER - TY - CHAP AU - Goble, C. A. AU - Belhajjame, K. AU - Tanoh, F. AU - Bhagat, J. AU - Wolstencroft, K. AU - Stevens, R. AU - Nzuobontane, E. AU - McWilliam, H. AU - Laurent, T. AU - Lopez, R. PY - 2009 DA - 2009// TI - BioCatalogue: A Curated Web Service Registry for The Life Science Community. BT - In 3rd International Biocuration Conference ID - Goble2009 ER - TY - JOUR AU - Wilkinson, M. D. AU - Links, M. PY - 2002 DA - 2002// TI - BioMOBY: an open source biological web services proposal. JO - Briefings in Bioinformatics VL - 3 UR - https://doi.org/10.1093/bib/3.4.331 DO - 10.1093/bib/3.4.331 ID - Wilkinson2002 ER - TY - JOUR AU - Oinn, T. AU - Greenwood, M. AU - Addis, M. AU - Alpdemir, N. AU - Wroe, C. PY - 2006 DA - 2006// TI - Taverna: lessons in creating a workflow environment for the life sciences. JO - Research Articles. Concurr. Comput. : Pract. Exper VL - 18 UR - https://doi.org/10.1002/cpe.993 DO - 10.1002/cpe.993 ID - Oinn2006 ER - TY - CHAP AU - Stevens, R. AU - Robinson, A. AU - Goble, C. PY - 2003 DA - 2003// TI - myGrid: personalised bioinformatics on the information grid. BT - In Bioinformatics (ISMB Supplement) ID - Stevens2003 ER - TY - CHAP AU - Afzal, H. AU - Stevens, R. AU - Nenadic, G. PY - 2009 DA - 2009// TI - Mining Semantic Descriptions of Bioinformatics Web Resources from the Literature. BT - Proceedings of the 6th European Semantic Web Conference on The Semantic Web: Research and Applications UR - https://doi.org/10.1007/978-3-642-02121-3_40 DO - 10.1007/978-3-642-02121-3_40 ID - Afzal2009 ER - TY - JOUR AU - Eales, J. M. AU - Pinney, J. W. AU - Stevens, R. D. AU - Robertson, D. L. PY - 2008 DA - 2008// TI - Methodology capture: discriminating between the "best" and the rest of community practice. JO - BMC Bioinformatics VL - 9 UR - https://doi.org/10.1186/1471-2105-9-359 DO - 10.1186/1471-2105-9-359 ID - Eales2008 ER - TY - CHAP AU - Afzal, H. AU - Stevens, R. AU - Nenadic, G. PY - 2008 DA - 2008// TI - Towards Semantic Annotation of Bioinformatics Services: Building a Controlled Vocabulary. BT - In Proc. of the Third International Symposium on Semantic Mining in Biomedicine ID - Afzal2008 ER - TY - JOUR AU - Wolstencroft, K. AU - Alper, P. AU - Hull, D. AU - Wroe, C. AU - Lord, P. W. AU - Stevens, R. D. AU - Goble, C. A. PY - 2007 DA - 2007// TI - The myGrid Ontology: Bioinformatics Service Discovery. JO - International Journal of Bioinformatics Research and Applications VL - 3 UR - https://doi.org/10.1504/IJBRA.2007.015005 DO - 10.1504/IJBRA.2007.015005 ID - Wolstencroft2007 ER - TY - STD TI - Web Services at the EBI. [http://www.ebi.ac.uk/Tools/webservices/] UR - http://www.ebi.ac.uk/Tools/webservices/ ID - ref12 ER - TY - STD TI - Termine Web Service. [http://www.nactem.ac.uk/software/termine/] UR - http://www.nactem.ac.uk/software/termine/ ID - ref13 ER - TY - CHAP AU - Nenadic, G. AU - Ananiadou, S. PY - 2006 DA - 2006// TI - Mining Semantically Related Terms from Biomedical Literature. BT - ACM Transactions on Asian Language Information Processing ID - Nenadic2006 ER - TY - CHAP AU - Salton, G. AU - Buckley, C. PY - 1998 DA - 1998// TI - Term-weighting approaches in automatic text retrieval. BT - Information Processing and Management ID - Salton1998 ER - TY - STD TI - Shatkay H: Hairpins in bookstacks: information retrieval from biomedical text. Brief Bioinform. 6: 222-238. 10.1093/bib/6.3.222. ID - ref16 ER - TY - STD TI - Teytaud O, Jalam R: Kernel-based text categorization. In International Joint Conference on Neural Networks. (IJCNN’2001), Washington DC (2001) ID - ref17 ER - TY - CHAP AU - Pahikkala, T. AU - Pyysalo, S. AU - Ginter, F. AU - Boberg, J. AU - Jarvinen, J. PY - 2005 DA - 2005// TI - Kernels incorporating word positional information in natural language disambiguation tasks. BT - Proc. of the Eighteenth International Florida Artificial Intelligence Research Society Conference ID - Pahikkala2005 ER - TY - JOUR AU - Lodhi, H. AU - Saunders, C. AU - Shawe-Taylor, J. AU - Cristianini, N. AU - Watkins, C. PY - 2002 DA - 2002// TI - Text classification using string kernels. JO - J. Mach. Learn VL - 2 ID - Lodhi2002 ER - TY - CHAP PY - 2009 DA - 2009// TI - R, a language and environment for statistical computing. BT - R Foundation for Statistical Computing ID - ref20 ER - TY - CHAP AU - Romesburg, H. C. PY - 2004 DA - 2004// TI - Cluster analysis for researchers. BT - Lulu Press, North Carolina ID - Romesburg2004 ER - TY - STD TI - Koonin E: The Clusters of Orthologous Groups (COGs) Database: Phylogenetic Classification of Proteins from Complete Genomes. The NCBI Handbook, Chapter 22 (NLM) ID - ref22 ER - TY - STD TI - Cytoscape. [http://www.cytoscape.org/] UR - http://www.cytoscape.org/ ID - ref23 ER - TY - JOUR AU - Vinayagam, A. AU - König, R. AU - Moormann, J. AU - Schubert, F. AU - Eils, R. AU - Glatting, K. H. AU - Suhai, S. PY - 2004 DA - 2004// TI - Applying Support Vector Machines for Gene ontology based gene function prediction. JO - BMC Bioinformatics VL - 5 UR - https://doi.org/10.1186/1471-2105-5-116 DO - 10.1186/1471-2105-5-116 ID - Vinayagam2004 ER - TY - JOUR AU - Rice, S. AU - Nenadic, G. AU - Stapley, B. PY - 2005 DA - 2005// TI - Mining Protein Function from Text Using Term-based Support Vector Machines. JO - BMC Bioinformatics VL - 6 UR - https://doi.org/10.1186/1471-2105-6-S1-S22 DO - 10.1186/1471-2105-6-S1-S22 ID - Rice2005 ER - TY - JOUR AU - Verspoor, K. AU - Cohn, J. AU - Joslyn, C. AU - Mniszewski, S. AU - Rechtsteiner, A. AU - Rocha, L. M. AU - Simas, T. PY - 2005 DA - 2005// TI - Protein annotation as term categorization in the gene ontology using word proximity networks. JO - BMC Bioinformatics VL - 6 UR - https://doi.org/10.1186/1471-2105-6-S1-S20 DO - 10.1186/1471-2105-6-S1-S20 ID - Verspoor2005 ER - TY - CHAP AU - Lin, K. H. Y. AU - Hou, W. J. AU - Chen, H. H. PY - 2006 DA - 2006// TI - Gene Ontology Annotation Using Word Proximity Relationship. BT - In Proc. Second Int. Symp. Semantic Mining ID - Lin2006 ER - TY - JOUR AU - Malone, B. M. AU - Perkins, A. D. AU - Bridges, S. M. PY - 2009 DA - 2009// TI - Integrating phenotype and gene expression data for predicting gene function. JO - BMC Bioinformatics VL - 10 UR - https://doi.org/10.1186/1471-2105-10-S11-S20 DO - 10.1186/1471-2105-10-S11-S20 ID - Malone2009 ER - TY - CHAP AU - Lerman, K. AU - Plangrasopchok, A. AU - Knoblock, C. PY - 2006 DA - 2006// TI - Automatically Labelling the Inputs and Outputs of Web Services. BT - In Proceedings of AAAI-2006 ID - Lerman2006 ER - TY - CHAP AU - Hess, A. AU - Kushmerick, N. PY - 2003 DA - 2003// TI - Learning to Attach Semantic Metadata to Web Services. BT - Proc. 2nd International Semantic Web Conference (ISWC2003) PB - Springer Berlin / Heidelberg CY - Sanibel Island, Florida, USA ID - Hess2003 ER - TY - CHAP AU - Liu, W. AU - Wong, W. PY - 2008 DA - 2008// TI - Discovering homogenous service communities through web service clustering. BT - Proceedings of the ID - Liu2008 ER - TY - CHAP AU - Carman, M. J. AU - Knoblock, C. A. PY - 2007 DA - 2007// TI - Learning Semantic Descriptions of Web Information Sources. BT - Twentieth International Joint conference on Artificial Intelligence ID - Carman2007 ER - TY - JOUR AU - Belhajjame, K. AU - Embury, S. M. AU - Paton, N. W. AU - Stevens, R. PY - 2007 DA - 2007// TI - Automatic annotation of Web services based on workflow definitions. JO - ACM Trans VL - 2 UR - https://doi.org/10.1145/1346337.1346239 DO - 10.1145/1346337.1346239 ID - Belhajjame2007 ER - TY - JOUR AU - Dong, X. AU - Halevy, A. AU - Madhavan, J. AU - Nemes, E. AU - Zhang, J. PY - 2004 DA - 2004// TI - Similarity search for Web services. JO - In Proceedings of the Thirtieth international conference on Very large data bases VL - 30 ID - Dong2004 ER - TY - CHAP AU - Shawe-Taylor, J. AU - Cristianini, N. PY - 2004 DA - 2004// BT - Kernel Methods for Pattern Analysis. UR - https://doi.org/10.1017/CBO9780511809682 DO - 10.1017/CBO9780511809682 ID - Shawe-Taylor2004 ER - TY - CHAP AU - Siolas, G. AU - d’Alche Buc, F. PY - 2000 DA - 2000// TI - Support Vector Machines based on a Semantic Kernel for Text Categorization. BT - Proceedings of the International Joint Conference on Neural Networks ID - Siolas2000 ER -