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Table 1 Examples of semantic classes and their instances

From: Mining semantic networks of bioinformatics e-resources from the literature

Semantic class

Example instances

Algorithm

SigCalc algorithm, CHAOS local alignment, SNP analysis, KEGG Genome-based approach, GeneMark method, K-fold cross validation procedure

Application

PreBIND Searcher program, Apollo2Go Web Service, FLIP application, Apollo Genome Annotation curation tool, GenePix software, Pegasys system

Data

GeneBank record, Genome Microbial CoDing sequences, Drug Data report

Data resource

PIR Protein Information Resource, BIND database, TIGR dataset, BioMOBY Public Code repository