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Table 4 A sample of resources used for exploration

From: Mining semantic networks of bioinformatics e-resources from the literature

Resource name Resource class Number of Sentences Number of descriptors
Gene ontology (GO) Data resource 6757 289
Support vector machine (SVM) Algorithm 2456 134
Protein data bank (PDB) Data resource 904 102
Hidden Markov model (HMM) Algorithm 602 94
Principal components analysis (PCA) Algorithm 599 18
Position-specific scoring matrix (PSSM) Algorithm 457 24
Self organising map (SOM) Algorithm 305 137
Medical subject headings (MeSH) Data resource 261 138
Neural network Algorithm 256 158
Markov chain Monte Carlo (MCMC) Algorithm 252 132
Expression profile Data 252 136
Basic local alignment search tool (BLAST) Application 238 160
Phylogenetic tree Data 233 175
Structural classification of proteins (SCOP) Data resource 216 114
Kyoto encyclopaedia of genes and genomes (KEGG) Data resource 187 143
Clusters of orthologous groups (COG) Data resource 163 94
ChIp-chip data Data 126 66
Pairwise alignment Data 123 80