Table 1 Services in the HMMER subset of the EMBOSS domain.
Service | Function |
|---|---|
edialign | Local multiple alignment of sequences. |
ehmmalign | Align sequences to an HMM profile. |
ehmmbuild | Build a profile HMM from an alignment. |
ehmmcalibrate | Calibrate HMM search statistics. |
ehmmconvert | Convert between profile HMM file formats. |
ehmmemit | Generate sequences from a profile HMM. |
ehmmfetch | Retrieve an HMM from an HMM database. |
ehmmindex | Create a binary SSI index for an HMM database. |
ehmmpfam | Search one or more sequences against an HMM database. |
ehmmsearch | Search sequence database with a profile HMM. |
emma | Global multiple alignment of sequences. |
makenucseq | Create random nucleotide sequences. |
makeprotseq | Create random protein sequences. |
showalign | Display a multiple sequence alignment in pretty format. |
showfeat | Display features of a sequence in pretty format. |
showpep | Displays protein sequences with features in pretty format. |
showseq | Display sequences with features in pretty format. |