Table 2 Manually defined domain: services in the HMMER subset.
Service | Input Types | Output Types |
|---|---|---|
edialign | MultipleSequence | Alignment |
ehmmalign | HMM, Sequence | Alignment |
ehmmbuild | Alignment | HMM |
ehmmcalibrate | HMM | HMM |
ehmmconvert | HMM | HMM |
ehmmemit | HMM | EhmmemitOutput |
ehmmfetch | HMMDatabase | HMM |
ehmmindex | HMMDatabase | HMMDatabase |
ehmmpfam | HMMDatabase, Sequence | EhmmpfamOutput |
ehmmsearch | HMM, SequenceDatabase | EhmmsearchOutput |
emma | MultipleSequence | Alignment, Tree |
makenucseq | - | MultipleNucleotideSequence |
makeprotseq | - | MultipleProteinSequence |
showalign | Alignment | - |
showfeat | Sequence | - |
showpep | ProteinSequence | - |
showseq | NucleotideSequence | - |