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Table 4 Example inference rules

From: Improving the extraction of complex regulatory events from scientific text by using ontology-based inference

No.

Condition(s) Conclusion

1

<RegulatoryProcess hasPolarity=Polarity2

  hasAgent=<RegulatoryProcess hasPatient=Patient hasPolarity=Polarity1>>

2

<RegulatoryProcess hasPolarity=Polarity2

  hasPatient=<RegulatoryProcess hasPatient=Patient hasPolarity=Polarity1>>

3

<RegulatoryProcess hasPatient=GeneExpression>

4

<RegulationOfGeneExpression hasAgent=TranscriptionFactor

  hasPatient=<GeneExpression hasPatient=Gene>>

+ <RegulatoryDNARegion hasAgent=Gene hasPart=<TFBS hasAgent=TranscriptionFactor>>

  hasPatient = <Transcription hasPatient=Gene> hasPhysicalContact=“yes”>