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Table 4 Example inference rules

From: Improving the extraction of complex regulatory events from scientific text by using ontology-based inference

No. Condition(s) Conclusion
1 <RegulatoryProcess hasPolarity=Polarity2
  hasAgent=<RegulatoryProcess hasPatient=Patient hasPolarity=Polarity1>>
2 <RegulatoryProcess hasPolarity=Polarity2
  hasPatient=<RegulatoryProcess hasPatient=Patient hasPolarity=Polarity1>>
3 <RegulatoryProcess hasPatient=GeneExpression>
4 <RegulationOfGeneExpression hasAgent=TranscriptionFactor
  hasPatient=<GeneExpression hasPatient=Gene>>
+ <RegulatoryDNARegion hasAgent=Gene hasPart=<TFBS hasAgent=TranscriptionFactor>>

  hasPatient = <Transcription hasPatient=Gene> hasPhysicalContact=“yes”>