Literature mining of protein-residue associations with graph rules learned through distant supervision

Table 1 Evaluation of performance of residue and mutation extraction on the Nagel corpus (original annotations)

Evaluation Scheme	Precision (%)	Recall (%)	F-Measure (%)
System1: -SLAA, +SLM	88.92	98.09	93.28
System 2: +SLAA,-SLM	71.86	79.01	75.27
System 3: -SLAA,-SLM	94.78	76.33	84.56
System 4: +SLAA,+SLM	74.42	98.85	84.91
Nagel et al.'s reported numbers	92.00	98.00	95.00

SLAA - Single letter Amino acid patterns; SLM - Single Letter Mutation patterns; + for inclusion of patterns; - for exclusion of patterns

ISSN: 2041-1480