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Table 3 Results for the case study

From: BioUSeR: a semantic-based tool for retrieving Life Science web resources driven by text-rich user requirements

Task

Facets

Resource

Rank

Retrieve gene sequence

Input: gene

getColiCardIDs_by_

1

 

Output: sequence

InteractingPartnersResource

 

Search similar sequences

Input: sequence

Database of Protein

1

 

Output: blast report

Subcellular Localization Resource

 

Predict gene structure

Input: gene

GlimmerResource

1

 

Output: gene model

  

Align protein sequences

Input: protein sequence

T-Coffee

1

 

Output: sequence alignment

  

Build phylogenetic trees

Input: sequence alignment

INB:http://www.bioinfo.uma.es

5

 

Output: phylogenetic tree

runCreateTreeFromClustalw

 

Analyze domains

Input: protein sequence

INB:inb.bsc.es:parseRulesFromMotif

1

  1. This table shows the selected resources for each user-defined task.