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Table 4 BioUSeR evaluation

From: BioUSeR: a semantic-based tool for retrieving Life Science web resources driven by text-rich user requirements

Base task

P@5

P@10

P@20

P

R

F

Search proteins with a functional domain

0.79

0.76

0.73

0.45

0.63

0.53

Search similar sequences

0.91

0.85

0.77

0.22

0.72

0.33

Analyze transgenic model organism

0.93

0.94

0.89

0.58

0.89

0.7

Find genes with functional relationships

0.78

0.75

0.66

0.34

0.39

0.36

Predict structure

0.91

0.91

0.85

0.47

0.29

0.36

Analyze phylogeny

0.8

0.8

0.79

0.52

0.36

0.43

Align sequences

0.73

0.76

0.74

0.62

0.3

0.41

  1. This table shows the precision, recall and F-measure of the results obtained for the queries of the query pool, associated to the 7 base tasks of the gold standard (GS). It also includes the precision for the top-5, top-10 and top-20 results.
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Journal of Biomedical Semantics

ISSN: 2041-1480