From: OPPL-Galaxy, a Galaxy tool for enhancing ontology exploitation as part of bioinformatics workflows
OPPL-Galaxy bundle | |
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OPPL | Executes OPPL scripts |
OWL Query | Perform DL (Description Logics) queries against OWL ontologies, returning a list of namedentities that satisfy the query |
OPPL Query | Perform OPPL queries, thus, queries that mix MOS with variables |
Inference | Add the inferred axioms to the input ontology as asserted axioms, generating a new ontologythat includes all the axioms |
Merge | Resolves the import axioms and adds the imported ontology to the input ontology file |
NCBO-Galaxy bundle | |
The NCBO-Galaxy bundle includes modules for retrieving ontologies, extracting subtrees from ontologies, | |
search for terms in ontologies, annotate texts against ontologies, etc. using NCBO Web services. See [38] for details | |
SPARQL-Galaxy bundle | |
SPARQL-Galaxy includes a tool for performing SPARQL queries on an OWL (RDF/XML) ontology; | |
it can be downloaded from the Galaxy Tool Shed (http://toolshed.g2.bx.psu.edu), under ‘Ontology manipulation’. | |
Galaxy-OBO | |
Galaxy-OBO [39] is a fork of Galaxy that includes wrappers for common tools like GO::TermFinder [40] |