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Table 1 Main ontology classes

From: HuPSON: the human physiology simulation ontology

Ontology class

Definition

Computer simulation

“A broad collection of methods used to study and analyze the behavior and performance of actual or theoretical systems. Simulation studies are performed, not on the real-world system, but on a (usually computer-based) model of the system created for the purpose of studying certain system dynamics and characteristics. […]”

Simulation step

“A specific stage of progression through a sequential process” of a simulation.

Algorithm

An algorithm is a set of instructions, sometimes called a procedure or a function, that is used to perform a certain task. […]

Scientific technique

A scientific technique is any systematic method to obtain information of a scientific nature or to obtain a desired material or product. […]

Model

A mathematical model is “the use of mathematical language to describe the behaviour of a system. A mathematical model usually describes a system by a set of variables and a set of equations that establish relationships between the variables. “ […]

Modelled thing

Thing that is mathematically described via a model.

Equation

A statement asserting the equality of two expressions, usually written as a linear array of symbols that are separated into left and right sides and joined by an equal sign.

Parameter

Any value passed to a program by the user or by another program in order to customize the program for a particular purpose. […]

  1. Definition of main HuPSON classes.