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Table 1 RDFized glycan databases in this study

From: Introducing glycomics data into the Semantic Web

DB name

URL

Number of entries as of May 2013

Number of triples

Reference

UniCarbKB

http://www.unicarbkb.org/

Over 3300 glycan structures, approximately 9000 structure and protein associations, with over 900 publications

1977 triples for structure and protein data of one experiment

[12]

BCSDB

http://csdb.glycoscience.ru/bacterial/

Over 10,000 structures, over 4000 publications, over 5000 taxons, and over 2500 NMR spectra

2,595,411 triples from all data

[7]

GlycomeDB

http://www.glycome-db.org/

37,140 glycan structure entries

518,733 triples from all data

[8]

MonosaccharideDB

http://www.monosaccharidedb.org/

About 700 monosaccharide entries

1911 triples of Basetypes, 14,692 triples of Monosaccharides, and 275 triples of Substituents

[10]

GlycoEpitope

http://www.glyco.is.ritsumei.ac.jp/epitope2/

174 glycoepitopes recognized by 613 antibodies and a wide range of biochemical information related to the glycoepitopes and antibodies

220,545 triples from all data

[17]

GlycoProtDB

http://jcggdb.jp/rcmg/glycodb/LectinSearch

1,830 entries of mice glycoproteins and 701 of C. elegans glycoproteins

2,337,104 triples

[18]

LfDB (Lectin frontier DataBase)

http://jcggdb.jp/rcmg/glycodb/LectinSearch

479 entries of lectin data, including PDB information, and their glycan interaction data

902 triples of lectin-PDB relationship data

[19]