TY - JOUR AU - Smedley, D. AU - Haider, S. AU - Ballester, B. PY - 2009 DA - 2009// TI - BioMart–biological queries made easy JO - BMC Genomics VL - 10 UR - https://doi.org/10.1186/1471-2164-10-22 DO - 10.1186/1471-2164-10-22 ID - Smedley2009 ER - TY - JOUR AU - Smith, R. N. AU - Aleksic, J. AU - Butano, D. PY - 2012 DA - 2012// TI - InterMine: a flexible data warehouse system for the integration and analysis of heterogeneous biological data JO - Bioinformatics VL - 28 UR - https://doi.org/10.1093/bioinformatics/bts577 DO - 10.1093/bioinformatics/bts577 ID - Smith2012 ER - TY - JOUR AU - Antezana, E. AU - Kuiper, M. AU - Mironov, V. PY - 2009 DA - 2009// TI - Biological knowledge management: the emerging role of the Semantic Web technologies JO - Brief Bioinform VL - 10 UR - https://doi.org/10.1093/bib/bbp024 DO - 10.1093/bib/bbp024 ID - Antezana2009 ER - TY - STD TI - Clinical Observations Interoperability.http://www.w3.org/wiki/HCLS/ClinicalObservationsInteroperability, UR - http://www.w3.org/wiki/HCLS/ClinicalObservationsInteroperability ID - ref4 ER - TY - JOUR AU - Samwald, M. AU - Jentzsch, A. AU - Bouton, C. PY - 2011 DA - 2011// TI - Linked open drug data for pharmaceutical research and development JO - J Cheminformatics VL - 3 UR - https://doi.org/10.1186/1758-2946-3-19 DO - 10.1186/1758-2946-3-19 ID - Samwald2011 ER - TY - JOUR AU - Belleau, F. AU - Nolin, M. -. A. AU - Tourigny, N. AU - Rigault, P. AU - Morissette, J. PY - 2008 DA - 2008// TI - Bio2RDF: towards a mashup to build bioinformatics knowledge systems JO - J Biomed Inform VL - 41 UR - https://doi.org/10.1016/j.jbi.2008.03.004 DO - 10.1016/j.jbi.2008.03.004 ID - Belleau2008 ER - TY - STD TI - Bio2RDF:http://bio2rdf.org/, UR - http://bio2rdf.org/ ID - ref7 ER - TY - JOUR AU - Bizer, C. AU - Heath, T. AU - Berners-Lee, T. PY - 2009 DA - 2009// TI - Linked data - The story so far JO - J Semantic Web Inf Syst VL - 5 ID - Bizer2009 ER - TY - JOUR AU - Goto, N. AU - Prins, P. AU - Nakao, M. PY - 2010 DA - 2010// TI - BioRuby: bioinformatics software for the Ruby programming language JO - Bioinformatics VL - 26 UR - https://doi.org/10.1093/bioinformatics/btq475 DO - 10.1093/bioinformatics/btq475 ID - Goto2010 ER - TY - STD TI - BioRuby:http://bioruby.org/, UR - http://bioruby.org/ ID - ref10 ER - TY - JOUR AU - Cock, P. J. A. AU - Antao, T. AU - Chang, J. T. PY - 2009 DA - 2009// TI - Biopython: freely available Python tools for computational molecular biology and bioinformatics JO - Bioinformatics VL - 25 UR - https://doi.org/10.1093/bioinformatics/btp163 DO - 10.1093/bioinformatics/btp163 ID - Cock2009 ER - TY - STD TI - BioPython.http://biopython.org/, UR - http://biopython.org/ ID - ref12 ER - TY - JOUR AU - Wilkinson, M. D. AU - McCarthy, L. AU - Vandervalk, B. PY - 2010 DA - 2010// TI - SADI, SHARE, and the in silico scientific method JO - BMC Bioinformatics VL - 11 UR - https://doi.org/10.1186/1471-2105-11-S12-S7 DO - 10.1186/1471-2105-11-S12-S7 ID - Wilkinson2010 ER - TY - STD TI - SADI:http://sadiframework.org/, UR - http://sadiframework.org/ ID - ref14 ER - TY - JOUR AU - Arakawa, K. AU - Kido, N. AU - Oshita, K. AU - Tomita, M. PY - 2010 DA - 2010// TI - G-language genome analysis environment with REST and SOAP web service interfaces JO - Nucleic Acids Res VL - 38 UR - https://doi.org/10.1093/nar/gkq315 DO - 10.1093/nar/gkq315 ID - Arakawa2010 ER - TY - STD TI - G-language.http://www.g-language.org/, UR - http://www.g-language.org/ ID - ref16 ER - TY - JOUR AU - Hull, D. AU - Wolstencroft, K. AU - Stevens, R. PY - 2006 DA - 2006// TI - Taverna: a tool for building and running workflows of services JO - Nucleic Acids Res VL - 34 UR - https://doi.org/10.1093/nar/gkl320 DO - 10.1093/nar/gkl320 ID - Hull2006 ER - TY - JOUR AU - Lyne, R. AU - Smith, R. AU - Rutherford, K. PY - 2007 DA - 2007// TI - FlyMine: an integrated database for Drosophila and Anopheles genomics JO - Genome Biol VL - 8 UR - https://doi.org/10.1186/gb-2007-8-7-r129 DO - 10.1186/gb-2007-8-7-r129 ID - Lyne2007 ER - TY - STD TI - FlyMine:http://www.flymine.org/, UR - http://www.flymine.org/ ID - ref19 ER - TY - JOUR AU - Lamprecht, A. -. L. AU - Margaria, T. AU - Steffen, B. PY - 2009 DA - 2009// TI - Bio-jETI: a framework for semantics-based service composition JO - BMC Bioinformatics VL - 10 UR - https://doi.org/10.1186/1471-2105-10-S10-S8 DO - 10.1186/1471-2105-10-S10-S8 ID - Lamprecht2009 ER - TY - STD TI - Bio-jETI:http://biojeti.cs.tu-dortmund.de/, UR - http://biojeti.cs.tu-dortmund.de/ ID - ref21 ER - TY - JOUR AU - Smoot, M. E. AU - Ono, K. AU - Ruscheinski, J. AU - Wang, P. -. L. AU - Ideker, T. PY - 2011 DA - 2011// TI - Cytoscape 2.8: new features for data integration and network visualization JO - Bioinformatics VL - 27 UR - https://doi.org/10.1093/bioinformatics/btq675 DO - 10.1093/bioinformatics/btq675 ID - Smoot2011 ER - TY - STD TI - Cytoscape.http://www.cytoscape.org/, UR - http://www.cytoscape.org/ ID - ref23 ER - TY - STD TI - BioHackathon. 2010,http://hackathon3.dbcls.jp/wiki/Participants, participants, UR - http://hackathon3.dbcls.jp/wiki/Participants ID - ref24 ER - TY - JOUR AU - Magrane, M. PY - 2011 DA - 2011// TI - UniProt Knowledgebase: a hub of integrated protein data JO - Database VL - 2011 UR - https://doi.org/10.1093/database/bar009 DO - 10.1093/database/bar009 ID - Magrane2011 ER - TY - STD TI - UniProt:http://www.uniprot.org/, UR - http://www.uniprot.org/ ID - ref26 ER - TY - STD TI - Korean HapMap Project.http://www.khapmap.org/, UR - http://www.khapmap.org/ ID - ref27 ER - TY - STD TI - TreeBase:http://www.treebase.org/, UR - http://www.treebase.org/ ID - ref28 ER - TY - JOUR AU - Kaminuma, E. AU - Kosuge, T. AU - Kodama, Y. PY - 2011 DA - 2011// TI - DDBJ progress report JO - Nucleic Acids Res VL - 39 UR - https://doi.org/10.1093/nar/gkq1041 DO - 10.1093/nar/gkq1041 ID - Kaminuma2011 ER - TY - STD TI - INSCD:http://www.insdc.org/, UR - http://www.insdc.org/ ID - ref30 ER - TY - STD TI - PDBj:http://www.pdbj.org/, UR - http://www.pdbj.org/ ID - ref31 ER - TY - JOUR AU - Kanehisa, M. AU - Goto, S. AU - Furumichi, M. AU - Tanabe, M. AU - Hirakawa, M. PY - 2010 DA - 2010// TI - KEGG for representation and analysis of molecular networks involving diseases and drugs JO - Nucleic Acids Res VL - 38 UR - https://doi.org/10.1093/nar/gkp896 DO - 10.1093/nar/gkp896 ID - Kanehisa2010 ER - TY - STD TI - KEGG:http://www.kegg.jp/, UR - http://www.kegg.jp/ ID - ref33 ER - TY - STD TI - DBCLS:http://dbcls.rois.ac.jp/, UR - http://dbcls.rois.ac.jp/ ID - ref34 ER - TY - JOUR AU - Aranda, B. AU - Achuthan, P. AU - Alam-Faruque, Y. PY - 2010 DA - 2010// TI - The IntAct molecular interaction database in 2010 JO - Nucleic Acids Res VL - 38 UR - https://doi.org/10.1093/nar/gkp878 DO - 10.1093/nar/gkp878 ID - Aranda2010 ER - TY - STD TI - IntAct.http://www.ebi.ac.uk/intact/, UR - http://www.ebi.ac.uk/intact/ ID - ref36 ER - TY - JOUR AU - Antezana, E. AU - Blondé, W. AU - Egaña, M. PY - 2009 DA - 2009// TI - BioGateway: a semantic systems biology tool for the life sciences JO - BMC Bioinformatics VL - 10 UR - https://doi.org/10.1186/1471-2105-10-S10-S11 DO - 10.1186/1471-2105-10-S10-S11 ID - Antezana2009 ER - TY - STD TI - BioGateway.http://www.semantic-systems-biology.org/biogateway, UR - http://www.semantic-systems-biology.org/biogateway ID - ref38 ER - TY - STD TI - DERI:http://www.deri.org/, UR - http://www.deri.org/ ID - ref39 ER - TY - JOUR AU - Aranda, B. AU - Blankenburg, H. AU - Kerrien, S. PY - 2011 DA - 2011// TI - PSICQUIC and PSISCORE: accessing and scoring molecular interactions JO - Nat Methods VL - 8 UR - https://doi.org/10.1038/nmeth.1637 DO - 10.1038/nmeth.1637 ID - Aranda2011 ER - TY - STD TI - PSICQUIC:http://psicquic.googlecode.com/, UR - http://psicquic.googlecode.com/ ID - ref41 ER - TY - STD TI - The HUPO Proteomics Standards Initiative.http://www.psidev.info/, UR - http://www.psidev.info/ ID - ref42 ER - TY - CHAP AU - Stearns, M. Q. AU - Price, C. AU - Spackman, K. A. AU - Wang, A. Y. PY - 2001 DA - 2001// TI - Proceedings of AMIA Symposium BT - SNOMED clinical terms: overview of the development process and project status ID - Stearns2001 ER - TY - CHAP AU - Rogers, J. AU - Roberts, A. AU - Solomon, D. PY - 2001 DA - 2001// TI - GALEN Ten Years On: Tasks and Supporting Tools BT - Proc Medinfo ID - Rogers2001 ER - TY - JOUR AU - Ashburner, M. AU - Ball, C. A. AU - Blake, J. A. PY - 2000 DA - 2000// TI - Gene ontology: tool for the unification of biology. The Gene Ontology Consortium JO - Nat Genet VL - 25 UR - https://doi.org/10.1038/75556 DO - 10.1038/75556 ID - Ashburner2000 ER - TY - JOUR AU - Gruber, T. R. PY - 1993 DA - 1993// TI - A translation approach to portable ontology specifications JO - Knowledge Acquisition VL - 5 UR - https://doi.org/10.1006/knac.1993.1008 DO - 10.1006/knac.1993.1008 ID - Gruber1993 ER - TY - JOUR AU - Chandrasekaran, B. AU - Josephson, J. R. AU - Benjamins, V. R. PY - 1999 DA - 1999// TI - What are ontologies, and why do we need them? JO - IEEE Intell Syst VL - 14 UR - https://doi.org/10.1109/5254.747902 DO - 10.1109/5254.747902 ID - Chandrasekaran1999 ER - TY - JOUR AU - Walls, R. L. AU - Athreya, B. AU - Cooper, L. PY - 2012 DA - 2012// TI - Ontologies as integrative tools for plant science JO - Am J Bot VL - 99 UR - https://doi.org/10.3732/ajb.1200222 DO - 10.3732/ajb.1200222 ID - Walls2012 ER - TY - JOUR AU - Courtot, M. AU - Juty, N. AU - Knüpfer, C. PY - 2011 DA - 2011// TI - Controlled vocabularies and semantics in systems biology JO - Mol Syst Biol VL - 7 UR - https://doi.org/10.1038/msb.2011.77 DO - 10.1038/msb.2011.77 ID - Courtot2011 ER - TY - JOUR AU - Abidi, S. R. AU - Abidi, S. S. R. AU - Hussain, S. AU - Shepherd, M. PY - 2007 DA - 2007// TI - Ontology-based modeling of clinical practice guidelines: a clinical decision support system for breast cancer follow-up interventions at primary care settings JO - Stud Health Technol Inform VL - 129 ID - Abidi2007 ER - TY - STD TI - RDF/XML Syntax Specification (Revised).http://www.w3.org/TR/REC-rdf-syntax/, UR - http://www.w3.org/TR/REC-rdf-syntax/ ID - ref51 ER - TY - STD TI - Notation3 (N3): A readable RDF syntax.http://www.w3.org/TeamSubmission/n3/, UR - http://www.w3.org/TeamSubmission/n3/ ID - ref52 ER - TY - STD TI - SPARQL:http://www.w3.org/TR/rdf-sparql-query/, UR - http://www.w3.org/TR/rdf-sparql-query/ ID - ref53 ER - TY - JOUR AU - Antezana, E. AU - Egaña, M. AU - Blondé, W. PY - 2009 DA - 2009// TI - The Cell Cycle Ontology: an application ontology for the representation and integrated analysis of the cell cycle process JO - Genome Biol VL - 10 UR - https://doi.org/10.1186/gb-2009-10-5-r58 DO - 10.1186/gb-2009-10-5-r58 ID - Antezana2009 ER - TY - STD TI - UniProt ftp:ftp://ftp.uniprot.org/pub/databases/uniprot/current_release/rdf/, UR - ftp://ftp.uniprot.org/pub/databases/uniprot/current_release/rdf/ ID - ref55 ER - TY - JOUR AU - Kosuge, T. AU - Abe, T. AU - Okido, T. PY - 2006 DA - 2006// TI - Exploration and grading of possible genes from 183 bacterial strains by a common protocol to identification of new genes: Gene Trek in Prokaryote Space (GTPS) JO - DNA Res VL - 13 UR - https://doi.org/10.1093/dnares/dsl014 DO - 10.1093/dnares/dsl014 ID - Kosuge2006 ER - TY - JOUR AU - Kinjo, A. R. AU - Suzuki, H. AU - Yamashita, R. PY - 2012 DA - 2012// TI - Protein Data Bank Japan (PDBj): maintaining a structural data archive and resource description framework format JO - Nucleic Acids Res VL - 40 UR - https://doi.org/10.1093/nar/gkr811 DO - 10.1093/nar/gkr811 ID - Kinjo2012 ER - TY - JOUR AU - Katayama, T. AU - Nakao, M. AU - Takagi, T. PY - 2010 DA - 2010// TI - TogoWS: integrated SOAP and REST APIs for interoperable bioinformatics Web services JO - Nucleic Acids Res VL - 38 UR - https://doi.org/10.1093/nar/gkq386 DO - 10.1093/nar/gkq386 ID - Katayama2010 ER - TY - STD TI - TogoWS:http://togows.dbcls.jp/, UR - http://togows.dbcls.jp/ ID - ref59 ER - TY - STD TI - TogoDB:http://togodb.dbcls.jp/, UR - http://togodb.dbcls.jp/ ID - ref60 ER - TY - STD TI - W3C Cool URI:http://www.w3.org/TR/cooluris/, UR - http://www.w3.org/TR/cooluris/ ID - ref61 ER - TY - STD TI - Polite URI:http://hackathon3.dbcls.jp/wiki/URI, UR - http://hackathon3.dbcls.jp/wiki/URI ID - ref62 ER - TY - STD TI - FreeBase:http://www.freebase.com/view/base/politeuri/views/9202a8c04000641f8000000013e0f893, UR - http://www.freebase.com/view/base/politeuri/views/9202a8c04000641f8000000013e0f893 ID - ref63 ER - TY - STD TI - LSRN:http://lsrn.org/, UR - http://lsrn.org/ ID - ref64 ER - TY - STD TI - Identifiers.org:http://identifiers.org/, UR - http://identifiers.org/ ID - ref65 ER - TY - STD TI - Semanticscience Integrated Ontology.http://code.google.com/p/semanticscience/wiki/SIO, UR - http://code.google.com/p/semanticscience/wiki/SIO ID - ref66 ER - TY - JOUR AU - Ceol, A. AU - Chatr Aryamontri, A. AU - Licata, L. PY - 2010 DA - 2010// TI - MINT, the molecular interaction database: 2009 update JO - Nucleic Acids Res VL - 38 UR - https://doi.org/10.1093/nar/gkp983 DO - 10.1093/nar/gkp983 ID - Ceol2010 ER - TY - JOUR AU - Stark, C. AU - Breitkreutz, B. -. J. AU - Chatr-Aryamontri, A. PY - 2011 DA - 2011// TI - The BioGRID Interaction Database: 2011 update JO - Nucleic Acids Res VL - 39 UR - https://doi.org/10.1093/nar/gkq1116 DO - 10.1093/nar/gkq1116 ID - Stark2011 ER - TY - JOUR AU - Razick, S. AU - Magklaras, G. AU - Donaldson, I. M. PY - 2008 DA - 2008// TI - iRefIndex: a consolidated protein interaction database with provenance JO - BMC Bioinformatics VL - 9 UR - https://doi.org/10.1186/1471-2105-9-405 DO - 10.1186/1471-2105-9-405 ID - Razick2008 ER - TY - JOUR AU - Chautard, E. AU - Fatoux-Ardore, M. AU - Ballut, L. AU - Thierry-Mieg, N. AU - Ricard-Blum, S. PY - 2011 DA - 2011// TI - MatrixDB, the extracellular matrix interaction database JO - Nucleic Acids Res VL - 39 UR - https://doi.org/10.1093/nar/gkq830 DO - 10.1093/nar/gkq830 ID - Chautard2011 ER - TY - JOUR AU - Croft, D. AU - O’Kelly, G. AU - Wu, G. PY - 2011 DA - 2011// TI - Reactome: a database of reactions, pathways and biological processes JO - Nucleic Acids Res VL - 39 UR - https://doi.org/10.1093/nar/gkq1018 DO - 10.1093/nar/gkq1018 ID - Croft2011 ER - TY - JOUR AU - Goll, J. AU - Rajagopala, S. V. AU - Shiau, S. C. PY - 2008 DA - 2008// TI - MPIDB: the microbial protein interaction database JO - Bioinformatics VL - 24 UR - https://doi.org/10.1093/bioinformatics/btn285 DO - 10.1093/bioinformatics/btn285 ID - Goll2008 ER - TY - STD TI - ChEMBL:https://www.ebi.ac.uk/chembl/, UR - https://www.ebi.ac.uk/chembl/ ID - ref73 ER - TY - STD TI - PSICQUIC Registry.http://www.ebi.ac.uk/Tools/webservices/psicquic/registry/registry?action=STATUS, UR - http://www.ebi.ac.uk/Tools/webservices/psicquic/registry/registry?action=STATUS ID - ref74 ER - TY - JOUR AU - Demir, E. AU - Cary, M. P. AU - Paley, S. PY - 2010 DA - 2010// TI - The BioPAX community standard for pathway data sharing JO - Nat Biotechnol VL - 28 UR - https://doi.org/10.1038/nbt.1666 DO - 10.1038/nbt.1666 ID - Demir2010 ER - TY - STD TI - PSI-MI XML.http://www.psidev.info/mif, UR - http://www.psidev.info/mif ID - ref76 ER - TY - STD TI - Apache Jena.http://jena.apache.org/, UR - http://jena.apache.org/ ID - ref77 ER - TY - JOUR AU - Funahashi, A. AU - Matsuoka, Y. AU - Jouraku, A. PY - 2008 DA - 2008// TI - CellDesigner 3.5: A Versatile Modeling Tool for Biochemical Networks JO - Proc IEEE VL - 96 UR - https://doi.org/10.1109/JPROC.2008.925458 DO - 10.1109/JPROC.2008.925458 ID - Funahashi2008 ER - TY - JOUR AU - Hucka, M. AU - Finney, A. AU - Sauro, H. M. PY - 2003 DA - 2003// TI - The systems biology markup language (SBML): a medium for representation and exchange of biochemical network models JO - Bioinformatics VL - 19 UR - https://doi.org/10.1093/bioinformatics/btg015 DO - 10.1093/bioinformatics/btg015 ID - Hucka2003 ER - TY - JOUR AU - Mizuno, S. AU - Iijima, R. AU - Ogishima, S. AU - Kikuchi, M. AU - Matsuoka, Y. AU - Ghosh, S. AU - Miyamoto, T. AU - Miyashita, A. AU - Kuwano, R. T. H. PY - 2012 DA - 2012// TI - AlzPathway: a comprehensive map of signaling pathways of Alzheimer’s disease JO - BMC Syst Biol VL - 6 UR - https://doi.org/10.1186/1752-0509-6-52 DO - 10.1186/1752-0509-6-52 ID - Mizuno2012 ER - TY - STD TI - AlzPathway.http://alzpathway.org/, UR - http://alzpathway.org/ ID - ref81 ER - TY - STD TI - SBML to BioPax.http://www.ebi.ac.uk/compneur-srv/sbml/converters/SBMLtoBioPax.html, UR - http://www.ebi.ac.uk/compneur-srv/sbml/converters/SBMLtoBioPax.html ID - ref82 ER - TY - JOUR AU - Oda, K. AU - Matsuoka, Y. AU - Funahashi, A. AU - Kitano, H. PY - 2005 DA - 2005// TI - A comprehensive pathway map of epidermal growth factor receptor signaling JO - Mol Syst Biol VL - 2005.0010 UR - https://doi.org/10.1038/msb4100014 DO - 10.1038/msb4100014 ID - Oda2005 ER - TY - STD TI - 4store.http://4store.org/, UR - http://4store.org/ ID - ref84 ER - TY - JOUR AU - Page, R. D. M. PY - 2006 DA - 2006// TI - Taxonomic names, metadata, and the semantc web JO - Biodiversity Inform VL - 3 ID - Page2006 ER - TY - JOUR AU - Soberón, J. AU - Peterson, A. T. PY - 2004 DA - 2004// TI - Biodiversity informatics: managing and applying primary biodiversity data JO - Philos Trans R Soc Lond B Biol Sci VL - 359 UR - https://doi.org/10.1098/rstb.2003.1439 DO - 10.1098/rstb.2003.1439 ID - Soberón2004 ER - TY - JOUR AU - Ley, R. E. AU - Turnbaugh, P. J. AU - Klein, S. AU - Gordon, J. I. PY - 2006 DA - 2006// TI - Human gut microbes associated with obesity JO - Nature VL - 444 UR - https://doi.org/10.1038/4441022a DO - 10.1038/4441022a ID - Ley2006 ER - TY - JOUR AU - Rusch, D. B. AU - Halpern, A. L. AU - Sutton, G. PY - 2007 DA - 2007// TI - The Sorcerer II Global Ocean Sampling expedition: northwest Atlantic through eastern tropical Pacific JO - PLoS Biol VL - 5 UR - https://doi.org/10.1371/journal.pbio.0050077 DO - 10.1371/journal.pbio.0050077 ID - Rusch2007 ER - TY - STD TI - TDWG ontology.http://wiki.tdwg.org/twiki/bin/view/TAG/TDWGOntology, UR - http://wiki.tdwg.org/twiki/bin/view/TAG/TDWGOntology ID - ref89 ER - TY - STD TI - DarwinCore.http://rs.tdwg.org/dwc/, UR - http://rs.tdwg.org/dwc/ ID - ref90 ER - TY - JOUR AU - Prosdocimi, F. AU - Chisham, B. AU - Pontelli, E. AU - Thompson, J. AU - Stoltzfus, A. PY - 2009 DA - 2009// TI - Initial Implementation of a comparative Data Analysis Ontology JO - Evol Bioinformatics VL - 5 ID - Prosdocimi2009 ER - TY - JOUR AU - Rebholz-Schuhmann, D. AU - Arregui, M. AU - Gaudan, S. AU - Kirsch, H. AU - Jimeno, A. PY - 2008 DA - 2008// TI - Text processing through Web services: calling Whatizit JO - Bioinformatics VL - 24 UR - https://doi.org/10.1093/bioinformatics/btm557 DO - 10.1093/bioinformatics/btm557 ID - Rebholz-Schuhmann2008 ER - TY - STD TI - Whatizit.http://www.ebi.ac.uk/webservices/whatizit, UR - http://www.ebi.ac.uk/webservices/whatizit ID - ref93 ER - TY - JOUR AU - O’Donoghue, S. I. AU - Horn, H. AU - Pafilis, E. PY - 2010 DA - 2010// TI - Reflect: A practical approach to web semantics JO - Web Semantics VL - 8 UR - https://doi.org/10.1016/j.websem.2010.03.003 DO - 10.1016/j.websem.2010.03.003 ID - O’Donoghue2010 ER - TY - JOUR AU - Prosdocimi, F. AU - Chisham, B. AU - Pontelli, E. AU - Thompson, J. AU - Stoltzfus, A. PY - 2009 DA - 2009// TI - Initial Implementation of a comparative Data Analysis Ontology JO - EvolBioinformatics VL - 5 ID - Prosdocimi2009 ER - TY - STD TI - Reflect.http://reflect.ws/, UR - http://reflect.ws/ ID - ref96 ER - TY - JOUR AU - Ananiadou, S. AU - Kell, D. B. AU - Tsujii, J. PY - 2006 DA - 2006// TI - Text mining and its potential applications in systems biology JO - Trends Biotechnol VL - 24 UR - https://doi.org/10.1016/j.tibtech.2006.10.002 DO - 10.1016/j.tibtech.2006.10.002 ID - Ananiadou2006 ER - TY - STD TI - Medie.http://www.nactem.ac.uk/medie/, UR - http://www.nactem.ac.uk/medie/ ID - ref98 ER - TY - STD TI - RDFa.http://rdfa.info/, UR - http://rdfa.info/ ID - ref99 ER - TY - JOUR AU - Splendiani, A. PY - 2008 DA - 2008// TI - RDFScape: Semantic Web meets systems biology JO - BMC Bioinformatics VL - 9 UR - https://doi.org/10.1186/1471-2105-9-S4-S6 DO - 10.1186/1471-2105-9-S4-S6 ID - Splendiani2008 ER - TY - JOUR AU - Goecks, J. AU - Nekrutenko, A. AU - Taylor, J. PY - 2010 DA - 2010// TI - Galaxy: a comprehensive approach for supporting accessible, reproducible, and transparent computational research in the life sciences JO - Genome Biol VL - 11 UR - https://doi.org/10.1186/gb-2010-11-8-r86 DO - 10.1186/gb-2010-11-8-r86 ID - Goecks2010 ER - TY - STD TI - Galaxy.http://main.g2.bx.psu.edu/, UR - http://main.g2.bx.psu.edu/ ID - ref102 ER - TY - STD TI - EBI Ontology Lookup Service.http://www.ebi.ac.uk/ontology-lookup/, UR - http://www.ebi.ac.uk/ontology-lookup/ ID - ref103 ER - TY - JOUR AU - Flicek, P. AU - Amode, M. R. AU - Barrell, D. PY - 2011 DA - 2011// TI - Ensembl 2011 JO - Nucleic Acids Res VL - 39 UR - https://doi.org/10.1093/nar/gkq1064 DO - 10.1093/nar/gkq1064 ID - Flicek2011 ER - TY - STD TI - Ensembl.http://www.ensembl.org/, UR - http://www.ensembl.org/ ID - ref105 ER - TY - JOUR AU - Dreszer, T. R. AU - Karolchik, D. AU - Zweig, A. S. PY - 2012 DA - 2012// TI - The UCSC Genome Browser database: extensions and updates 2011 JO - Nucleic Acids Res VL - 40 UR - https://doi.org/10.1093/nar/gkr1055 DO - 10.1093/nar/gkr1055 ID - Dreszer2012 ER - TY - JOUR AU - Contrino, S. AU - Smith, R. N. AU - Butano, D. PY - 2012 DA - 2012// TI - modMine: flexible access to modENCODE data JO - Nucleic Acids Res VL - 40 UR - https://doi.org/10.1093/nar/gkr921 DO - 10.1093/nar/gkr921 ID - Contrino2012 ER - TY - STD TI - EDAM Ontology.http://edamontology.org/, UR - http://edamontology.org/ ID - ref108 ER - TY - JOUR AU - Wilkinson, M. D. AU - Senger, M. AU - Kawas, E. PY - 2008 DA - 2008// TI - Interoperability with Moby 1.0--it’s better than sharing your toothbrush! JO - Brief Bioinform VL - 9 UR - https://doi.org/10.1093/bib/bbn003 DO - 10.1093/bib/bbn003 ID - Wilkinson2008 ER - TY - JOUR AU - Heim, P. AU - Hellmann, S. AU - Lehmann, J. AU - Lohmann, S. PY - 2009 DA - 2009// TI - RelFinder: Revealing Relationships in RDF Knowledge Bases JO - Proc 4th Int Conf Semantic Digital Media Technol, (Lecture Notes Comput Sci) VL - 5887 ID - Heim2009 ER - TY - STD TI - RelFinder:http://www.visualdataweb.org/relfinder.php, UR - http://www.visualdataweb.org/relfinder.php ID - ref111 ER - TY - STD TI - G-language Bookmarklet.http://www.g-language.org/wiki/bookmarklet, UR - http://www.g-language.org/wiki/bookmarklet ID - ref112 ER - TY - JOUR AU - Wilkinson, M. D. AU - Vandervalk, B. AU - McCarthy, L. PY - 2011 DA - 2011// TI - The Semantic Automated Discovery and Integration (SADI) Web service Design-Pattern, API and Reference Implementation JO - J Biomed Semantics VL - 2 UR - https://doi.org/10.1186/2041-1480-2-8 DO - 10.1186/2041-1480-2-8 ID - Wilkinson2011 ER - TY - STD TI - CPAN:http://www.cpan.org/, UR - http://www.cpan.org/ ID - ref114 ER - TY - STD TI - SADI framework.http://code.google.com/p/sadi/, UR - http://code.google.com/p/sadi/ ID - ref115 ER - TY - STD TI - Daggoo.http://www.daggoo.net/, UR - http://www.daggoo.net/ ID - ref116 ER - TY - STD TI - Evidence ontology.http://code.google.com/p/evidenceontology/, UR - http://code.google.com/p/evidenceontology/ ID - ref117 ER -