Table 1 Application web-based workflows[28]
From: Deploying and sharing U-Compare workflows as web services
Web service name | Type | Language | Components | Annotations |
|---|---|---|---|---|
Oscar Maximum | Chemical | English | OscarTokenizer, | chemical expression, |
Entropy Markov | NER | OscarMER | chemical adjective, | |
Model (OscarMeMM) | ontology term, chemical | |||
compound reaction | ||||
NeMINE | Biomedical | English | Sentence Segmentation, | gene, protein |
NER | NeMINE | |||
A Biomedical Named | Biomedical | English | Sentence Segmentation, | protein, DNA, RNA, |
Entity Recognizer | NER | ABNER-NLBPA | Cell line, Cell type | |
(ABNER) | ||||
GENIA POS tagger | POS tagger, | English | Sentence Segmentation, | protein, DNA, RNA, |
Biomedical | GENIA Tagger | Cell line, Cell type, | ||
NER | Token, Chunk | |||
English | Sentence Segmentation, | protein, | ||
Disease Extraction | GENIA tagger, | DNA, RNA, | ||
with Concept | Biomedical | Morphological analysis, | Cell line, | |
Association (DECA) | NER | SpeciesTagger | Cell type, | |
(NCBI Taxonomy), | Species, | |||
Extract Abbreviation, | SpeciesNormalizedEntity | |||
Species Disambiguation | ||||
Yeast Metabliner | Biomedical | English | Yeast Metabliner | Metabolites |
NER | ||||
OrgHub | Biomedical | English | Extract Features super- | Organisms, |
NER | vised CRF classifier | Habitats | ||
Apertium | POS tagger | English, | Morphological analysis, | Morphological |
Spanish, | POS tagging | annotations, | ||
Portuguese, | POS tags | |||
Catalan | ||||
LX-Chunker | Chunker | Portuguese | LX-Chunker | Paragraphs, |
Sentences | ||||
LX-Tokenizer | Tokenizer | Portuguese | LX-Chunker | Paragraphs |
LX-Tokenizer | Sentences | |||
Tokens | ||||
NIITranslator | Statistical | English, | n-ii Translator | Translated text |
Machine | Spanish | |||
Translator | ||||
UAICTokenizer | Tokenizer | Independent | UAICTokenizer | Tokens |
UAICLemmatizer | Lemmatizer | Romanian | UAICTokenizer | Tokens |
UAICLemmatizer | Lemmas | |||
MLRSSentence- | Sentence | Independent, | MLRSSentenceSplitter | Sentences |
Splitter | Splitter | tuned for | ||
Maltese |