TopFed: TCGA tailored federated query processing and linking to LOD

Table 2 Excerpt of the links for the lookup files of TCGA

Source	Target	Class	# links	Runtime (ms)
DNA27	HGNC	Genes	23,181	154
DNA27	Homologene	Genes	27,654	193
DNA27	OMIM	Genes	15,171	158
DNA450	Homologene	Genes	489,643	5,710
DNA450	OMIM	Genes	212,284	429
DNA27	HGNC	Chromosomes	108,662	96
DNA27	OMIM	Chromosomes	16,039,535	8,055

The source column shows the name of the look-up file that was linked to the target dataset named in the second column. The class column shows the type of resources that were linked. The fourth column shows the number of links that were generated while the runtime column shows the time required by LIMES to carry out the linking process in ms.

ISSN: 2041-1480