Table 4 Benchmark queries descriptions
From: TopFed: TCGA tailored federated query processing and linking to LOD
Query | Description |
|---|---|
Q1 | Get the chromosome, start, stop and mean copy number values of the patient TCGA-18-4721 for genome locations 554268 to 5994290 |
Q2 | Get the chromosome, start, stop and mean exon-expression values of all the TCGA patients |
Q3 | Get the chromosome, position and mean methylation values of all the TCGA patients |
Q4 | Get the chromosome, start and stop values of the TCGA patient TCGA-C4-A0F6 |
Q5 | Get the chromosome, start, stop values of all the TCGA patients |
Q6 | Get the chromosome, start, stop and miRNA values of the 20th record of TCGA patient TCGA-AB-2821 |
Q7 | Get the chromosome, start and stop values of the TCGA patient TCGA-AB-2823 for mean sequence value of 0.0839 |
Q8 | Get the chromosome, start, stop, mean protein expression and mean exon-expression values of the TCGA patient TCGA-18-3410 |
Q9 | Get the chromosome, mean gene expression and mean methylation values of the TCGA patient TCGA-C5-A1BF |
Q10 | Get the chromosome, mean gene expression, mean exon expression and mean methylation values of all the TCGA patients |