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Table 1 Ontologies used in Stem Cell Commons.

From: Semantic Web repositories for genomics data using the eXframe platform

Content Type

Attribute

Ontology

Biomaterial

Organism

NCBITaxon [34]

Biomaterial

Development Stage

EFO [10]

Biomaterial

Tissue Type

FMA [12], EFO [10], BTO [37]

Biomaterial

Cell Type

CL [11], EFO [10]

Biomaterial

Disease State

NCI Thesaurus [36]

Biomaterial

Treatment

CHEBI [35], NCI Thesaurus [36]

  1. Following ontologies were used to annotate the samples (biomaterial content type).
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Journal of Biomedical Semantics

ISSN: 2041-1480