Skip to main content

Table 1 The proposed typology for capturing COPD phenotypes

From: Supporting the annotation of chronic obstructive pulmonary disease (COPD) phenotypes with text mining workflows

Type

Description

Example(s)

1) Problem

an overall category for any COPD indications of concern

frequent exacerbator

a) MedicalCondition*

any disease or medical condition; includes COPD comorbidities

emphysema, pulmonary vascular disease, asthma, congestive heart failure

b) RiskFactor*

a phenotype signifying a patient’s increased chances of having COPD

increased levels of the c-reactive protein, alpha1 antitrypsin deficiency

i) SignOrSymptom*

an observable irregularity manifested by a COPD patient

chronic cough, shortness of breath, purulent sputum production

ii) IndividualBehaviour*

a patient’s habits leading to susceptibility of having COPD

smoking for 25 years

iii) TestOrMeasureResult*

findings based on COPD-relevant examinations

increased white blood cell counts, FEV1 45% predicted

2) Treatment

any medication, therapy or program for treating COPD

oxygen therapy, pulmonary rehabilitation, pursed lips breathing

3) TestOrMeasure

an overall category for any COPD-relevant examinations or measures/parameters

increased compliance of the lung, FEV1, FEV1/FVC ratio

a) RadiologicalTest

any of the radiological tests for detecting COPD

computed tomography scanning, high resolution computed tomography

b) MicrobiologicalTest

an examination of a COPD- relevant specimen

complete blood count

c) PhysiologicalTest

a measurement of a COPD patient’s capacity to exercise

6-min walking distance

  1. Types marked with an asterisk (*) were adapted from the PhenoCHF scheme.