Table 1 Statistics of co-mentions extracted from both Medline and PMCOA using the different dictionaries for identifying GO terms
From: Evaluating a variety of text-mined features for automatic protein function prediction with GOstruct
Human | |||||
|---|---|---|---|---|---|
Dictionary | Span | Unique proteins | Unique GO terms | Unique co-mentions | Total co-mentions |
Original | sentence | 12,826 | 14,102 | 1,473,579 | 25,765,168 |
non-sentence | 13,459 | 17,231 | 3,070,466 | 147,524,964 | |
combined | 13,492 | 17,424 | 3,222,619 | 173,289,862 | |
Enhanced | sentence | 12,998 | 15,415 | 1,839,360 | 33,199,284 |
non-sentence | 13,513 | 18,713 | 3,725,450 | 196,761,554 | |
combined | 13,536 | 18,920 | 3,897,951 | 229,960,838 | |
Yeast | |||||
Dictionary | Span | Unique proteins | Unique GO terms | Unique co-mentions | Total co-mentions |
Original | sentence | 5,016 | 9,471 | 317,715 | 2,945,833 |
non-sentence | 5,148 | 12,582 | 715,363 | 18,142,448 | |
combined | 5,160 | 12,819 | 748,427 | 21,088,281 | |
Enhanced | sentence | 5,063 | 12,877 | 414,322 | 3,853,994 |
non-sentence | 5,160 | 13,769 | 901,123 | 23,986,761 | |
combined | 5,167 | 14,018 | 939,743 | 27,840,755 | |