Skip to main content

Table 3 Description of the gold standard human annotations and predictions made by GOstruct from each type of feature

From: Evaluating a variety of text-mined features for automatic protein function prediction with GOstruct

 

Molecular

Biological

Cellular

 

function

process

component

Feature type

# Predictions

# Predictions

# Predictions

Gold standard

36,349

264,631

79,631

Original

102,486

268,068

76,513

Enhanced

64,919

276,734

81,094

BoW

40,499

268,114

77,753

Combined

62,039

386,267

78,475

  1. All numbers are counts based on the predictions broken down by sub-ontology; these counts have the ‘true path rule’ applied.