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Table 1 MP terms assigned to IMPC parameters, by systems

From: Expanding the mammalian phenotype ontology to support automated exchange of high throughput mouse phenotyping data generated by large-scale mouse knockout screens

System

Terms assigned

New terms

Adipose tissue

6

3

Behavior/neurological

85

15

Cardiovascular system

59

9

Craniofacial

39

1

Digestive/alimentary

6

10

Embryogenesis

3

0

Endocrine/exocrine gland

13

3

Growth/size/body

16

3

Hearing/vestibular/ear

18

3

Hematopoietic system

82

25

Homeostasis/metabolism

216

129

Immune system

67

24

Integument

55

9

Limbs/digits/tail

42

6

Liver/biliary system

1

1

Mortality/aging

10

7

Muscle

5

0

Nervous system

5

4

Pigmentation

13

0

Renal/urinary system

6

2

Reproductive system

25

4

Respiratory system

9

4

Skeleton

70

11

Taste/olfaction

1

0

Vision/eye

55

14

  1. MP terms used in annotations in postnatal tests in IMPC as of 10/10/2014. Note: the total number in the second column is more than 752; this is due to terms assigned to multiple systems, such as “abnormal testis morphology” [MP:0001146], which occurs in both the endocrine/exocrine gland and reproductive systems headings. Some new terms were added during the Europhenome and Sanger Institute’s Mouse Resource Portal pilot phenotyping projects; others were added recently to describe IMPC pipeline parameters.
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Journal of Biomedical Semantics

ISSN: 2041-1480