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Table 1 Three example questions among a corpus of 125 questions for training and evaluating AskCuebee. The first column shows the question and the second column shows the data sets required to answer the question

From: A framework for ontology-based question answering with application to parasite immunology

Question

Data sources involved

Give the KO ID, gene ID, gene name, researcher notes, and knockout plasmid IDs for all genes that have orthologs in T.brucei and leishmania.

Gene knockout from TRG Ortholog information from TriTrypDB and KEGG

Find 5’ forward regions and all pathways for amastigote stages with log2 ratio above 1.

Microarray from TRG Gene knockout from TRG Pathway from KEGG

What are the metabolic pathways related to protein group 271 for the ortholog genes with spectral score less than 2.0?

Gene knockout from TRG Proteome data from TRG Strain creation data from TRG Ortholog information from TriTrypDB and KEGG Pathway data from KEGG