From: A framework for ontology-based question answering with application to parasite immunology
Question | Data sources involved |
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Give the KO ID, gene ID, gene name, researcher notes, and knockout plasmid IDs for all genes that have orthologs in T.brucei and leishmania. | Gene knockout from TRG Ortholog information from TriTrypDB and KEGG |
Find 5’ forward regions and all pathways for amastigote stages with log2 ratio above 1. | Microarray from TRG Gene knockout from TRG Pathway from KEGG |
What are the metabolic pathways related to protein group 271 for the ortholog genes with spectral score less than 2.0? | Gene knockout from TRG Proteome data from TRG Strain creation data from TRG Ortholog information from TriTrypDB and KEGG Pathway data from KEGG |