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Table 2 A subset of new OMIT terms

From: OmniSearch: a semantic search system based on the Ontology for MIcroRNA Target (OMIT) for microRNA-target gene interaction data

OMIT new term Direct parent term Human-readable explanation
computationally_asserted_evidence IAO:information content entity Evidence obtained from some
   computational methods.
information_from_miRNA_ OMIT:computationally_asserted_evidence Records obtained from various
target_prediction_database   miRNA target prediction databases.
prediction_from_miRDB OMIT:information_from_miRNA_ Records specifically obtained
  target_prediction_database from the miRDB database.
prediction_from_TargetScan OMIT:information_from_miRNA_ Records specifically obtained
  target_prediction_database from the TargetScan database.
prediction_from_miRanda OMIT:information_from_miRNA_ Records specifically obtained
  target_prediction_database from the miRanda database.
target_score_in_miRDB IAO:measurement datum The score of some specific
   miRNA-target binding prediction
   from the miRDB database.
gene_context_score_in_TargetScan IAO:measurement datum The context score of some specific
   miRNA-target binding prediction
   from the TargetScan database.
mirSVR_score_in_miRanda IAO:measurement datum The mirSVR score of some specific
   miRNA-target binding prediction
   from the miRanda database.
information_from_NCBI_gene IAO:information content entity Records obtained from NCBI Gene
   according to gene IDs or gene symbols.
information_from_NCBI_nucleotide IAO:information content entity Records obtained from NCBI Nucleotide
   according to GenBank Accession numbers.
information_from_PubMed IAO:information content entity Records obtained from the PubMed
   database according to PMIDs.