OmniSearch: a semantic search system based on the Ontology for MIcroRNA Target (OMIT) for microRNA-target gene interaction data

Table 3 A subset of new OMIT relations

New relation	Domain	Range	Human-readable explanation
OMIT:miRNA_target_	NCRO:miRNA_and_	OMIT:computationally_	Specific miRNA-target binding
assumption_	target_gene_binding	asserted_evidence	prediction is based on some
based_on			computationally asserted evidence.
OMIT:is_quality_	IAO:measurement datum	OMIT:computationally_	A piece of measurement datum
measurement_of		asserted_evidence	(e.g., the target score in miRDB)
			is a quality measurement of
			computationally asserted evidence.
OMIT:is_gene_	NCRO:miRNA_target_gene	OMIT:target_protein	A miRNA target gene
template_of_protein			serves as a template
			of relevant protein.
RO:has participant	OMIT:prediction_from_miRDB	SO:miRNA	Each miRNA-target binding
			prediction record has one
			miRNA as a participant.
RO:has participant	OMIT:prediction_from_miRDB	NCRO:miRNA_target_gene	Each miRNA-target binding
			prediction record has one
			target as a participant.
RO:part of	OMIT:target_score_in_miRDB	OMIT:prediction_from_miRDB	Each miRNA-target binding
			prediction record from
			miRDB contains one score.
			Each record from NCBI
RO:part of	OMIT:PubMed_summary_	OMIT:information_from_NCBI_gene	Gene contains one or
		in_NCBI_gene	more PubMed summaries.

ISSN: 2041-1480