Table 2 A list of ncRNA-related databases

Ensembl ncRNA

A database of ncRNA annotations.

http://www.ensembl.org/info/genome/genebuild/ncrna.html

GENCODE

A database for annotation of gene features.

http://www.gencodegenes.org

lncRNAdb

A reference database for functional lncRNAs.

http://www.lncrnadb.org

lncRNAtor

A Web portal encompassing lncRNA data.

http://lncrnator.ewha.ac.kr

miRBase

A database of miRNA sequences and annotation.

http://www.mirbase.org/

NDB

A database of experimentally determined nucleic acids.

http://ndbserver.rutgers.edu

NONCODE

A database of ncRNAs except for tRNAs and rRNAs.

http://www.noncode.org/

NRED

An ncRNA expression database.

http://nred.matticklab.com/cgi-bin/ncrnadb.pl

Rfam

A database of a collection of RNA families.

http://rfam.xfam.org

RMDB

Chemical Mapping Data of RNA Sequences.

https://rmdb.stanford.edu