TY - STD TI - Saleem M, Khan Y, Hasnain A, Ermilov I, Ngomo A-CN. A fine-grained evaluation of sparql endpoint federation systems. Semantic Web Journal. 2014. http://content.iospress.com/articles/semantic-web/sw186. Accessed 5 Feb 2017. UR - http://content.iospress.com/articles/semantic-web/sw186 ID - ref1 ER - TY - STD TI - Saleem M, Shanmukha S, Ngonga AC, Almeida JS, Decker S, Deus HF. Linked cancer genome atlas database. In: I-Semantics 2013: 2013. p. 129–34. http://dl.acm.org/citation.cfm?id=2506200. Accessed 5 Feb 2017. UR - http://dl.acm.org/citation.cfm?id=2506200 ID - ref2 ER - TY - STD TI - Saleem M, Padmanabhuni SS, Ngomo A-CN, Iqbal A, Almeida JS, Decker S, Deus HF. TopFed: TCGA tailored federated query processing and linking to LOD. J Biomed Semantics. 2014:1–33. https://jbiomedsem.biomedcentral.com/articles/10.1186/2041-1480-5-47. Accessed 5 Feb 2017. UR - https://jbiomedsem.biomedcentral.com/articles/10.1186/2041-1480-5-47 ID - ref3 ER - TY - STD TI - Hasnain A, Zainab SSE, Kamdar MR, Mehmood Q, Warren Jr C, et al. A roadmap for navigating the life scinces linked open data cloud. In: International Semantic Technology (JIST2014) Conference: 2014. http://link.springer.com/chapter/10.1007/978-3-319-15615-6_8. Accessed 5 Feb 2017. UR - http://link.springer.com/chapter/10.1007/978-3-319-15615-6_8 ID - ref4 ER - TY - STD TI - Hasnain A, Mehmood Q, Sana e Zainab S, Hogan A. SPORTAL: Profiling the Content of Public SPARQL Endpoints. International Journal on Semantic Web and Information Systems (IJSWIS). 2016; 12(3):134–163. doi:10.4018/IJSWIS.2016070105. UR - http://dx.doi.org/10.4018/IJSWIS.2016070105 ID - ref5 ER - TY - JOUR AU - Bechhofer, S. AU - Buchan, I. AU - De Roure, D. AU - Missier, P. PY - 2013 DA - 2013// TI - Why linked data is not enough for scientists JO - Future Generation Comput Syst VL - 29 UR - https://doi.org/10.1016/j.future.2011.08.004 DO - 10.1016/j.future.2011.08.004 ID - Bechhofer2013 ER - TY - JOUR AU - Stein, L. D. PY - 2003 DA - 2003// TI - Integrating biological databases JO - Nat Rev Genet VL - 4 UR - https://doi.org/10.1038/nrg1065 DO - 10.1038/nrg1065 ID - Stein2003 ER - TY - JOUR AU - Goble, C. AU - Stevens, R. AU - Hull, D. PY - 2008 DA - 2008// TI - Data curation+ process curation= data integration+ science JO - Brief Bioinform VL - 9 UR - https://doi.org/10.1093/bib/bbn034 DO - 10.1093/bib/bbn034 ID - Goble2008 ER - TY - JOUR AU - Cheung, K. H. AU - Frost, H. R. AU - Marshall, M. S. PY - 2009 DA - 2009// TI - A journey to semantic web query federation in the life sciences JO - BMC Bioinform VL - 10 UR - https://doi.org/10.1186/1471-2105-10-S10-S10 DO - 10.1186/1471-2105-10-S10-S10 ID - Cheung2009 ER - TY - STD TI - Quilitz B, Leser U. Querying distributed rdf data sources with sparql. In: ESWC: 2008. p. 524–38. http://link.springer.com/chapter/10.1007/978-3-540-68234-9_39. Accessed 5 Feb 2017. UR - http://link.springer.com/chapter/10.1007/978-3-540-68234-9_39 ID - ref10 ER - TY - STD TI - Schwarte A, Haase P, Hose K, Schenkel R, Schmidt M. Fedx: Optimization techniques for federated query processing on linked data. In: ISWC: 2011. p. 601–16. http://link.springer.com/chapter/10.1007/978-3-642-25073-6_38. Accessed 5 Feb 2017. UR - http://link.springer.com/chapter/10.1007/978-3-642-25073-6_38 ID - ref11 ER - TY - STD TI - Görlitz O, Staab S. Splendid: Sparql endpoint federation exploiting void descriptions. In: COLD at ISWC: 2011. http://dl.acm.org/citation.cfm?id=2887354. Accessed 5 Feb 2017. UR - http://dl.acm.org/citation.cfm?id=2887354 ID - ref12 ER - TY - STD TI - Saleem M, Ngonga Ngomo A-C, Parreira JX, Deus H, Hauswirth M. Daw: Duplicate-aware federated query processing over the web of data. In: Proceedings of ISWC: 2013. http://link.springer.com/chapter/10.1007/978-3-642-41335-3_36. Accessed 5 Feb 2017. UR - http://link.springer.com/chapter/10.1007/978-3-642-41335-3_36 ID - ref13 ER - TY - STD TI - Saleem M, Ngomo A-CN. Hibiscus: Hypergraph-based source selection for sparql endpoint federation. In: Extended Semantic Web Conference (ESWC): 2014. http://link.springer.com/chapter/10.1007/978-3-319-07443-6_13. Accessed 5 Feb 2017. UR - http://link.springer.com/chapter/10.1007/978-3-319-07443-6_13 ID - ref14 ER - TY - STD TI - Hasnain A, Mehmood Q, e Zainab SS, Decker S. A provenance assisted roadmap for life sciences linked open data cloud. In: KESW: 2015. p. 72–86. http://link.springer.com/chapter/10.1007/978-3-319-24543-0_6. Accessed 5 Feb 2017. UR - http://link.springer.com/chapter/10.1007/978-3-319-24543-0_6 ID - ref15 ER - TY - STD TI - Hasnain A, Fox R, Decker S, Deus HF. Cataloguing and linking life sciences LOD Cloud. In: 1st International Workshop on Ontology Engineering in a Data-driven World Collocated with EKAW12: 2012. https://aran.library.nuigalway.ie/handle/10379/4841. Accessed 5 Feb 2017. UR - https://aran.library.nuigalway.ie/handle/10379/4841 ID - ref16 ER - TY - STD TI - Harth A, Hose K, Karnstedt M, Polleres A, Sattler KU, Umbrich J. Data summaries for on-demand queries over linked data. In: Proceedings of the 19th International Conference on World Wide Web WWW ’10: 2010. p. 411–20. http://dl.acm.org/citation.cfm?doid=1772690.1772733. Accessed 5 Feb 2017. UR - http://dl.acm.org/citation.cfm?doid=1772690.1772733 ID - ref17 ER - TY - JOUR AU - Umbrich, J. AU - Hose, K. AU - Karnstedt, M. AU - Harth, A. AU - Polleres, A. PY - 2011 DA - 2011// TI - Comparing data summaries for processing live queries over linked data JO - World Wide Web VL - 14 UR - https://doi.org/10.1007/s11280-010-0107-z DO - 10.1007/s11280-010-0107-z ID - Umbrich2011 ER - TY - STD TI - Vandervalk BP, Mccarthy EL, Wilkinson MD. Share: A semantic web query engine for bioinformatics. In: The Semantic Web. Springer: 2009. p. 367–9. http://link.springer.com/chapter/10.1007/978-3-642-10871-6_27. Accessed 5 Feb 2017. UR - http://link.springer.com/chapter/10.1007/978-3-642-10871-6_27 ID - ref19 ER - TY - JOUR AU - González, A. AU - Callahan, A. AU - Cruz-Toledo, J. AU - Garcia, A. AU - Egaña Aranguren, M. AU - Dumontier, M. AU - Wilkinson, M. D. PY - 2014 DA - 2014// TI - Automatically exposing openlifedata via sadi semantic web services JO - J Biomed Semantics VL - 5 UR - https://doi.org/10.1186/2041-1480-5-46 DO - 10.1186/2041-1480-5-46 ID - González2014 ER - TY - STD TI - Kaoudi Z, Kyzirakos K, Koubarakis M. Sparql query optimization on top of dhts. In: Proceedings of the 9th International Semantic Web Conference on The Semantic Web - Volume Part I. ISWC’10: 2010. p. 418–35. http://link.springer.com/chapter/10.1007/978-3-642-17746-0_27. Accessed 5 Feb 2017. UR - http://link.springer.com/chapter/10.1007/978-3-642-17746-0_27 ID - ref21 ER - TY - STD TI - Basca C, Bernstein A. Avalanche: putting the spirit of the web back into semantic web querying. In: Proceedings Of The 6th International Workshop On Scalable Semantic Web Knowledge Base Systems (SSWS2010): 2010. p. 64–79. http://dl.acm.org/citation.cfm?id=2878444. Accessed 5 Feb 2017. UR - http://dl.acm.org/citation.cfm?id=2878444 ID - ref22 ER - TY - STD TI - Vandervalk BP, McCarthy EL, Wilkinson MD. Optimization of distributed sparql queries using edmonds’ algorithm and prim’s algorithm. In: Computational Science and Engineering, 2009. CSE’09. International Conference On. IEEE: 2009. p. 330–7. http://dl.acm.org/citation.cfm?id=1633287. Accessed 5 Feb 2017. UR - http://dl.acm.org/citation.cfm?id=1633287 ID - ref23 ER - TY - STD TI - Quilitz B, Leser U. Querying distributed rdf data sources with sparql. In: Proceedings of the 5th European Semantic Web Conference on The Semantic Web: Research and Applications. ESWC’08: 2008. p. 524–38. http://dl.acm.org/citation.cfm?id=1789443. Accessed 5 Feb 2017. UR - http://dl.acm.org/citation.cfm?id=1789443 ID - ref24 ER - TY - STD TI - Langegger A, Wöß W, Blöchl M. A semantic web middleware for virtual data integration on the web. In: Proceedings of the 5th European Semantic Web Conference on The Semantic Web: Research and Applications. ESWC’08: 2008. p. 493–507. http://link.springer.com/chapter/10.1007/978-3-540-68234-9_37. Accessed 5 Feb 2017. UR - http://link.springer.com/chapter/10.1007/978-3-540-68234-9_37 ID - ref25 ER - TY - STD TI - Görlitz O, Staab S. Splendid: Sparql endpoint federation exploiting void descriptions. In: Proceedings of the 2nd International Workshop on Consuming Linked Data, Bonn, Germany: 2011. ID - ref26 ER - TY - JOUR AU - Broder, A. Z. AU - Charikar, M. AU - Frieze, A. M. AU - Mitzenmacher, M. PY - 1998 DA - 1998// TI - Min-wise independent permutations JO - J Comput Syst Sci VL - 60 ID - Broder1998 ER - TY - STD TI - Li Y, Heflin J. Using reformulation trees to optimize queries over distributed heterogeneous sources. In: Proceedings of the 9th International Semantic Web Conference on The Semantic Web - Volume Part I. ISWC’10: 2010. p. 502–17. http://link.springer.com/chapter/10.1007/978-3-642-17746-0_32. Accessed 5 Feb 2017. UR - http://link.springer.com/chapter/10.1007/978-3-642-17746-0_32 ID - ref28 ER - TY - STD TI - Nolle A, Nemirovski G. Elite: An entailment-based federated query engine for complete and transparent semantic data integration. In: Informal Proceedings of the 26th International Workshop on Description Logics, Ulm, Germany, July 23 - 26, 2013: 2013. p. 854–867. http://ceur-ws.org/Vol-1014/paper_50.pdf. Accessed 5 Feb 2017. UR - http://ceur-ws.org/Vol-1014/paper_50.pdf ID - ref29 ER - TY - STD TI - Ladwig G, Tran T. Linked data query processing strategies. In: Proceedings of the 9th International Semantic Web Conference on The Semantic Web - Volume Part I, ISWC’10: 2010. p. 453–69. http://link.springer.com/chapter/10.1007/978-3-642-17746-0_29. Accessed 5 Feb 2017. UR - http://link.springer.com/chapter/10.1007/978-3-642-17746-0_29 ID - ref30 ER - TY - STD TI - Acosta M, Vidal ME, Lampo T, Castillo J, Ruckhaus E. Anapsid: an adaptive query processing engine for sparql endpoints. In: Proceedings of the 10th International Conference on The Semantic Web - Volume Part I. ISWC’11: 2011. p. 18–34. http://link.springer.com/chapter/10.1007/978-3-642-25073-6_2. Accessed 5 Feb 2017. UR - http://link.springer.com/chapter/10.1007/978-3-642-25073-6_2 ID - ref31 ER - TY - STD TI - Zeginis D, et al. A collaborative methodology for developing a semantic model for interlinking Cancer Chemoprevention linked-data sources. Semantic Web. 2013. http://content.iospress.com/articles/semantic-web/sw112. Accessed 5 Feb 2017. UR - http://content.iospress.com/articles/semantic-web/sw112 ID - ref32 ER - TY - STD TI - Hasnain A, Kamdar MR, Hasapis P, Zeginis D, Warren Jr CN, Deus HF, Ntalaperas D, Tarabanis K, Mehdi M, Decker S. Linked biomedical dataspace: lessons learned integrating data for drug discovery. In: The Semantic Web–ISWC 2014. Springer: 2014. p. 114–30. http://link.springer.com/chapter/10.1007/978-3-319-11964-9_8. Accessed 5 Feb 2017. UR - http://link.springer.com/chapter/10.1007/978-3-319-11964-9_8 ID - ref33 ER - TY - JOUR AU - Deus, H. F. AU - Stanislaus, R. AU - Veiga, D. F. AU - Behrens, C. AU - Wistuba, I. I. AU - Minna, J. D. AU - Garner, H. R. AU - Swisher, S. G. AU - Roth, J. A. AU - Correa, A. M. PY - 2008 DA - 2008// TI - A semantic web management model for integrative biomedical informatics JO - PloS One VL - 3 UR - https://doi.org/10.1371/journal.pone.0002946 DO - 10.1371/journal.pone.0002946 ID - Deus2008 ER - TY - JOUR AU - McCarthy, L. AU - Vandervalk, B. AU - Wilkinson, M. PY - 2012 DA - 2012// TI - Sparql assist language-neutral query composer JO - BMC Bioinformatics VL - 13 UR - https://doi.org/10.1186/1471-2105-13-S1-S2 DO - 10.1186/1471-2105-13-S1-S2 ID - McCarthy2012 ER - TY - STD TI - Schmidt M, Görlitz O, Haase P, Ladwig G, Schwarte A, Tran T. Fedbench: A benchmark suite for federated semantic data query processing. In: The Semantic Web–ISWC 2011. Springer: 2011. p. 585–600. http://link.springer.com/chapter/10.1007/978-3-642-25073-6_37. Accessed 5 Feb 2017. UR - http://link.springer.com/chapter/10.1007/978-3-642-25073-6_37 ID - ref36 ER - TY - STD TI - Duan S, Kementsietsidis A, Srinivas K, Udrea O. Apples and oranges: A comparison of rdf benchmarks and real rdf datasets. In: Proceedings of the 2011 ACM SIGMOD International Conference on Management of Data: 2011. p. 145–56. http://dl.acm.org/citation.cfm?id=1989340. Accessed 5 Feb 2017. UR - http://dl.acm.org/citation.cfm?id=1989340 ID - ref37 ER - TY - JOUR AU - Wu, H. AU - Fujiwara, T. AU - Yamamoto, Y. AU - Bolleman, J. AU - Yamaguchi, A. PY - 2014 DA - 2014// TI - Biobenchmark toyama 2012: an evaluation of the performance of triple stores on biological data JO - J Biomed Semantics VL - 5 UR - https://doi.org/10.1186/2041-1480-5-32 DO - 10.1186/2041-1480-5-32 ID - Wu2014 ER - TY - STD TI - Görlitz O, Thimm M, Staab S. Splodge: Systematic generation of sparql benchmark queries for linked open data. In: International Semantic Web Conference: 2012. p. 116–32. http://link.springer.com/chapter/10.1007/978-3-642-35176-1_8. Accessed 5 Feb 2017. UR - http://link.springer.com/chapter/10.1007/978-3-642-35176-1_8 ID - ref39 ER - TY - STD TI - Aluç G, Hartig O, Ozsu MT, Daudjee K. Diversified stress testing of rdf data management systems. In: International Semantic Web Conference: 2014. p. 197–212. http://link.springer.com/chapter/10.1007/978-3-319-11964-9_13. Accessed 5 Feb 2017. UR - http://link.springer.com/chapter/10.1007/978-3-319-11964-9_13 ID - ref40 ER - TY - STD TI - Montoya G, Vidal ME, Corcho O, Ruckhaus E, Buil-Aranda C. Benchmarking federated sparql query engines: are existing testbeds enough? In: International Semantic Web Conference: 2012. p. 313–24. http://link.springer.com/chapter/10.1007/978-3-642-35173-0_21. Accessed 5 Feb 2017. UR - http://link.springer.com/chapter/10.1007/978-3-642-35173-0_21 ID - ref41 ER - TY - STD TI - e Zainab SS, Saleem M, Mehmood Q, Zehra D, Decker S, Hasnain A. Fedviz: A visual interface for SPARQL queries formulation and execution. In: Proceedings of the International Workshop on Visualizations and User Interfaces for Ontologies and Linked Data Co-located with 14th International Semantic Web Conference (ISWC 2015), Bethlehem, Pennsylvania, USA, October 11, 2015: 2015. p. 49. http://ceur-ws.org/Vol-1456/paper5.pdf. Accessed 5 Feb 2017. UR - http://ceur-ws.org/Vol-1456/paper5.pdf ID - ref42 ER -