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Table 1 The most central nodes in the network. The top 10 nodes based on Degree (D), Eigenvector (E), Closeness (C), and Betweenness (B) centrality metrics. The minimum (i.e., top) rank of each node based on any of the four centrality metrics is shown in the Min column

From: Ontology-based literature mining of E. coli vaccine-associated gene interaction networks

Type

Name

D

E

C

B

Min

Vaccine gene

fimH

1

1

2

1

1

Vaccine gene

fepA

2

2

1

2

1

E. coli

fimA

3

7

9

6

3

E. coli

ompT

4

4

3

4

3

E. coli

hlyA

5

3

4

-

3

INO

Inclusion

6

5

3

7

3

Vaccine gene

vat

-

-

-

3

3

Vaccine gene

carA

-

-

-

5

5

INO

protein translation

-

-

5

-

5

E. coli

yfcU

8

6

-

-

6

INO

gene expression

9

-

6

10

6

E. coli

entF

7

-

-

-

7

E. coli

chuA

9

8

7

-

7

E. coli

tonB

-

-

-

8

8

INO

dominant regulation

-

-

8

-

8

INO

association

9

9

9

-

9

INO

regulation

9

-

9

-

9

Vaccine gene

carB

-

-

-

9

9

E. coli

hlyD

-

10

-

-

10

  1. The rankings of the terms are shown. Terms with the same centrality scores have the same ranking. Abbreviations here: “E. coli” - E. coli gene, “Vaccine gene” - E. coli vaccine gene; “INO” – INO term