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Table 4 Comparison of F-measures obtained with various combination of substructure and neighborhood settings. F-measures are averaged over two other parameters: the depth of the neighborhood (d=4,6,8,10,12,15) and the length of the substructures (l=4,6,8,10,12,15)

From: Learning from biomedical linked data to suggest valid pharmacogenes

Substructures \ Neighborhood

Graph

Tree

Bag of Labels

0.763

0.781

Walks

0.777

0.797

Sub-trees

0.782

0.803