Table 3 Queries translated into DL queries

Q1 – Which biological processes have proteins of the kind Prot ₁ as participant?

‘Biological process’ and (‘has participant’ some Prot ₁)

Q2 – In which cellular locations is Prot ₁ active in organisms of the type Org ₁?

‘Cellular component’ and (‘is included in’ some Org ₁) and

(includes some Prot _i )

Q3 – Which proteins are involved in processes of the type BProc ₁ in organisms of the type Org ₁?

Protein and (‘is participant in’ some BProc ₁) and (‘is included in’ some Org ₁)

Q4 – Which organisms are able to exhibit a specific phenotype Phen ₁?

Organism and (‘is bearer of’ some (Disposition and (‘has realization’ only Phen ₁)))