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Table 3 Alignment results of data elements between CDASH Medication and TCGA Clinical Pharmaceutical

From: Building a semantic web-based metadata repository for facilitating detailed clinical modeling in cancer genome studies

Question Text

Prompt Data Element Name

TCGA CDEs or Enriched Data Elements

Were any medications taken?

Any meds

Administered

What is the medication/treatment identifier?

CM number

Identifier; Unique Identifier

What was the term for the medication/therapy taken?

Medication or Therapy

Drug Name

Did the subject take < specific medication/treatment > ?

<specific medication/treatment>

Cytokine Administered; Placebo Bevacizumab Administered; HER2/neu Administered

What were the active ingredients?

Active Ingredients

PubChem Compound Identifier

For what indication was the medication/therapy taken?

Indication

Indication

What was the ID for the adverse events(s) for which the medication was taken?

AE ID

Toxicity Description; Toxicity Grade

What was the ID of the medical history condition(s) for which the medication was taken?

MH ID

 

What was the individual dose of the medical/therapy?

Dose

Prescribed Dose

What was the total daily dose of the medication therapy?

Total Daily Dose

Cumulative Agent Total Dose

What was the unit of the medical/therapy?

Dose Unit

Total Dose Units;Prescribed Dose Units

What was the dose form of the medication/therapy?

Dose Form

Pharmaceutical Dosage Form Code

What was the frequency of the medication/therapy?

Frequency

Number Cycles

What was the route of administration of the medication/therapy?

Route

Route Of Administration

What was the start date of the medication/therapy?

Start Date

Year Of Drug Therapy Start;Month Of Drug Therapy Start; Day Of Drug Therapy Start

What was the start time of the medication/therapy?

Start Time

Agent Administered Begin Time

Was the medication/therapy taken prior to the study?

Taken Prior to Study?

Prior Therapy Treatment Regimen

What was the end date of the medication/therapy?

End Date

Year Of Drug Therapy End; Month Of Drug Therapy End; Day Of Drug Therapy End

What was the end time of the medication/therapy?

End Time

Agent Administered End Time

Is the medication/therapy still ongoing?

Ongoing

Therapy Ongoing

  1. Bold italic font indicates an enriched data element