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Table 4 Evaluation results for four DO subnetworks

From: Towards a more molecular taxonomy of disease

 

Edge Correctness

Ancestor Correctness

F-score (Ancestor precision, ancestor recall)

 

Parent

  

Parent

  

Parent

  

Root disease

Promotion

CliXO

MWST

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CliXO

MWST

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CliXO

MWST

Cardiovascular disease

0.06

0.09

0.07

0.32

0.18

0.11

0.50

0.27

0.21

       

(0.57, 0.44)

(0.24, 0.30)

(0.13, 0.48)

Gastrointestinal disease

0.17

0.13

0.03

0.37

0.26

0.14

0.55

0.39

0.26

       

(0.56, 0.53)

(0.36, 0.42)

(0.18, 0.48)

Musculoskeletal disease

0.16

0.08

0.10

0.15

0.26

0.09

0.26

0.41

0.17

       

(0.44, 0.18)

(0.42, 0.40)

(0.16, 0.19)

Nervous System disease

0.13

0.07

0.09

0.29

0.17

0.10

0.46

0.30

0.19

       

(0.70, 0.34)

(0.26, 0.34)

(0.13, 0.34)

  1. Average Edge Correctness (EC), Ancestor Correctness (AC), Ancestor Precision (AP), Ancestor Recall (AR) and F-score across four DO subnetworks. Standard deviation is shown in parentheses. Best performance across different inference techniques is highlighted as italic