Table 10 Manual assessment of unique mappings and estimated positive and negative contribution in the DOID-ORDO task
From: Matching disease and phenotype ontologies in the ontology alignment evaluation initiative
System-mappings | Unique mappings | Precision | Positive contrib. | Negative contrib. |
|---|---|---|---|---|
BioPortal (baseline) | 5 | 0.40 | ||
AML | 308 | 0.87 | 30.40% | 4.68% |
DiSMatch | 259 | 0.40 | 11.80% | 17.70% |
FCA − Map | 61 | 0.83 | 5.79% | 1.16% |
LogMap | 80 | 0.90 | 8.20% | 0.91% |
LogMapBio | 144 | 0.97 | 15.85% | 0.55% |
LogMapLt | 7 | 0.50 | 0.40% | 0.40% |
PhenoMF | 3 | 1.00 | 0.34% | 0.00% |
XMap | 16 | 0.56 | 1.03% | 0.80% |
Total | 878 | 0.75 | 73.81% | 26.19% |