Matching disease and phenotype ontologies in the ontology alignment evaluation initiative

Table 6 Results against consensus alignments with vote =2 and vote =3 in the HP-MP task

System-mappings	Mappings	Precision-2	F-Measure-2	Recall-2	Precision-3	F-Measure-3	Recall-3
BioPortal (baseline)	639	1.00	0.50	0.33	1.00	0.60	0.43
AML	1755	0.93	0.86	0.80	0.85	0.90	0.94
DiSMatch	644	0.55	0.30	0.21	0.45	0.28	0.20
FCA − Map	1590	0.98	0.85	0.75	0.94	0.93	0.92
LYAM + +	381	0.41	0.12	0.07	0.17	0.06	0.04
LogMap	2011	0.94	0.92	0.91	0.77	0.86	0.97
LogMapBio	2151	0.92	0.92	0.93	0.75	0.85	0.98
LogMapLt	667	1.00	0.51	0.34	1.00	0.62	0.45
PhenoMF	204,089	0.76	0.83	0.92	0.63	0.76	0.95
PhenoMM	198,149	0.77	0.83	0.91	0.64	0.76	0.94
PhenoMP	169,660	0.78	0.67	0.58	0.64	0.57	0.51
XMap	650	1.00	0.50	0.33	1.00	0.61	0.44

ISSN: 2041-1480