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Table 6 Results against consensus alignments with vote =2 and vote =3 in the HP-MP task

From: Matching disease and phenotype ontologies in the ontology alignment evaluation initiative

System-mappings Mappings Precision-2 F-Measure-2 Recall-2 Precision-3 F-Measure-3 Recall-3
BioPortal (baseline) 639 1.00 0.50 0.33 1.00 0.60 0.43
AML 1755 0.93 0.86 0.80 0.85 0.90 0.94
DiSMatch 644 0.55 0.30 0.21 0.45 0.28 0.20
FCA Map 1590 0.98 0.85 0.75 0.94 0.93 0.92
LYAM + + 381 0.41 0.12 0.07 0.17 0.06 0.04
LogMap 2011 0.94 0.92 0.91 0.77 0.86 0.97
LogMapBio 2151 0.92 0.92 0.93 0.75 0.85 0.98
LogMapLt 667 1.00 0.51 0.34 1.00 0.62 0.45
PhenoMF 204,089 0.76 0.83 0.92 0.63 0.76 0.95
PhenoMM 198,149 0.77 0.83 0.91 0.64 0.76 0.94
PhenoMP 169,660 0.78 0.67 0.58 0.64 0.57 0.51
XMap 650 1.00 0.50 0.33 1.00 0.61 0.44
  1. Precision and Recall represent their semantic variants