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Table 7 Results against consensus alignments with vote =2 and vote =3 in the DOID-ORDO task

From: Matching disease and phenotype ontologies in the ontology alignment evaluation initiative

System-mappings

Mappings

Precision-2

F-Measure-2

Recall-2

Precision-3

F-Measure-3

Recall-3

BioPortal (baseline)

1018

0.99

0.71

0.55

0.99

0.76

0.62

AML

2098

0.85

0.91

0.97

0.78

0.87

1.00

DiSMatch

335

0.23

0.08

0.05

0.19

0.07

0.04

FCA Map

1803

0.97

0.96

0.96

0.89

0.94

0.99

LogMap

1667

0.95

0.91

0.88

0.91

0.92

0.94

LogMapBio

1804

0.92

0.91

0.90

0.86

0.90

0.95

LogMapLt

1000

0.99

0.72

0.56

0.99

0.76

0.62

PhenoMF

40,612

0.95

0.89

0.83

0.95

0.94

0.92

XMap

1030

0.98

0.72

0.57

0.98

0.77

0.63

  1. Precision and Recall represent their semantic variants