From: Matching disease and phenotype ontologies in the ontology alignment evaluation initiative
System-mappings | Mappings | Precision-2 | F-Measure-2 | Recall-2 | Precision-3 | F-Measure-3 | Recall-3 |
---|---|---|---|---|---|---|---|
BioPortal (baseline) | 1018 | 0.99 | 0.71 | 0.55 | 0.99 | 0.76 | 0.62 |
AML | 2098 | 0.85 | 0.91 | 0.97 | 0.78 | 0.87 | 1.00 |
DiSMatch | 335 | 0.23 | 0.08 | 0.05 | 0.19 | 0.07 | 0.04 |
FCA − Map | 1803 | 0.97 | 0.96 | 0.96 | 0.89 | 0.94 | 0.99 |
LogMap | 1667 | 0.95 | 0.91 | 0.88 | 0.91 | 0.92 | 0.94 |
LogMapBio | 1804 | 0.92 | 0.91 | 0.90 | 0.86 | 0.90 | 0.95 |
LogMapLt | 1000 | 0.99 | 0.72 | 0.56 | 0.99 | 0.76 | 0.62 |
PhenoMF | 40,612 | 0.95 | 0.89 | 0.83 | 0.95 | 0.94 | 0.92 |
XMap | 1030 | 0.98 | 0.72 | 0.57 | 0.98 | 0.77 | 0.63 |