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Table 7 Results against consensus alignments with vote =2 and vote =3 in the DOID-ORDO task

From: Matching disease and phenotype ontologies in the ontology alignment evaluation initiative

System-mappings Mappings Precision-2 F-Measure-2 Recall-2 Precision-3 F-Measure-3 Recall-3
BioPortal (baseline) 1018 0.99 0.71 0.55 0.99 0.76 0.62
AML 2098 0.85 0.91 0.97 0.78 0.87 1.00
DiSMatch 335 0.23 0.08 0.05 0.19 0.07 0.04
FCA Map 1803 0.97 0.96 0.96 0.89 0.94 0.99
LogMap 1667 0.95 0.91 0.88 0.91 0.92 0.94
LogMapBio 1804 0.92 0.91 0.90 0.86 0.90 0.95
LogMapLt 1000 0.99 0.72 0.56 0.99 0.76 0.62
PhenoMF 40,612 0.95 0.89 0.83 0.95 0.94 0.92
XMap 1030 0.98 0.72 0.57 0.98 0.77 0.63
  1. Precision and Recall represent their semantic variants