Table 8 Results against curated alignments
From: Matching disease and phenotype ontologies in the ontology alignment evaluation initiative
System-mappings | HP-MP task | DOID-ORDO task | ||
|---|---|---|---|---|
Standard recall | Semantic recall | Standard recall | Semantic recall | |
BioPortal (baseline) | 0.17 | 0.52 | 0.00 | 0.00 |
AML | 0.28 | 0.76 | 0.00 | 0.00 |
DiSMatch | 0.07 | 0.14 | 0.02 | 0.03 |
FCA − Map | 0.21 | 0.62 | 0.00 | 0.00 |
LYAM + + | 0.00 | 0.00 | - | - |
LogMap | 0.24 | 0.66 | 0.02 | 0.12 |
LogMapBio | 0.28 | 0.69 | 0.03 | 0.17 |
LogMapLt | 0.17 | 0.52 | 0.00 | 0.00 |
PhenoMF | 0.90 | 0.90 | 0.00 | 0.00 |
PhenoMM | 0.90 | 0.90 | - | - |
PhenoMP | 0.83 | 0.83 | - | - |
XMap | 0.17 | 0.52 | 0.00 | 0.00 |
Consensus vote = 1 | 0.90 | 0.90 | 0.05 | 0.20 |
Consensus vote = 2 | 0.31 | 0.79 | 0.00 | 0.00 |
Consensusvote = 3 | 0.24 | 0.66 | 0.00 | 0.00 |