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Table 9 Manual assessment of unique mappings and estimated positive and negative contribution in the HP-MP task

From: Matching disease and phenotype ontologies in the ontology alignment evaluation initiative

System-mappings Unique mappings Precision Positive contrib. Negative contrib.
BioPortal (baseline) 0 -   
AML 122 0.87 8.63% 1.33%
DiSMatch 291 0.83 19.80% 3.96%
FCA Map 26 0.96 2.04% 0.08%
LYAM + + 226 0.70 12.91% 5.53%
LogMap 130 0.93 9.90% 0.71%
LogMapBio 176 0.93 13.40% 0.96%
LogMapLt 0 - - -
PhenoMF 89 1.00 7.27% 0.00%
PhenoMM 85 1.00 6.94% 0.00%
PhenoMP 80 1.00 6.53% 0.00%
XMap 0 - - -
Total 1225 0.91 87.42% 12.58%