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Table 9 Manual assessment of unique mappings and estimated positive and negative contribution in the HP-MP task

From: Matching disease and phenotype ontologies in the ontology alignment evaluation initiative

System-mappings

Unique mappings

Precision

Positive contrib.

Negative contrib.

BioPortal (baseline)

0

-

  

AML

122

0.87

8.63%

1.33%

DiSMatch

291

0.83

19.80%

3.96%

FCA Map

26

0.96

2.04%

0.08%

LYAM + +

226

0.70

12.91%

5.53%

LogMap

130

0.93

9.90%

0.71%

LogMapBio

176

0.93

13.40%

0.96%

LogMapLt

0

-

-

-

PhenoMF

89

1.00

7.27%

0.00%

PhenoMM

85

1.00

6.94%

0.00%

PhenoMP

80

1.00

6.53%

0.00%

XMap

0

-

-

-

Total

1225

0.91

87.42%

12.58%