Table 4 Comparison between the LexicalMatcher using all class names and synonyms, and using only primary names
From: Tackling the challenges of matching biomedical ontologies
Task | All names & synonyms | Primary name | ||||
|---|---|---|---|---|---|---|
| Â | Precision | Recall | F-measure | Precision | Recall | F-measure |
Anatomy | 96.1% | 69.7% | 80.8% | 99.7% | 61.5% | 76.1% |
FMA-NCI small | 97.5% | 77.5% | 86.4% | 99.5% | 51.7% | 68.1% |
FMA-SNOMED small | 98.8% | 19.9% | 33.2% | 99.2% | 15.1% | 26.2% |
SNOMED-NCI small | 96.5% | 52.6% | 68.1% | 98.9% | 40.6% | 57.6% |
FMA-NCI whole | 69.5% | 77.5% | 73.3% | 96.7% | 51.7% | 67.4% |
FMA-SNOMED whole | 94.6% | 19.9% | 32.9% | 96.6% | 15.1% | 26.1% |
SNOMED-NCI whole | 86.7% | 52.6% | 65.5% | 96.8% | 40.6% | 57.2% |