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Table 4 Comparison between the LexicalMatcher using all class names and synonyms, and using only primary names

From: Tackling the challenges of matching biomedical ontologies

Task All names & synonyms Primary name
  Precision Recall F-measure Precision Recall F-measure
Anatomy 96.1% 69.7% 80.8% 99.7% 61.5% 76.1%
FMA-NCI small 97.5% 77.5% 86.4% 99.5% 51.7% 68.1%
FMA-SNOMED small 98.8% 19.9% 33.2% 99.2% 15.1% 26.2%
SNOMED-NCI small 96.5% 52.6% 68.1% 98.9% 40.6% 57.6%
FMA-NCI whole 69.5% 77.5% 73.3% 96.7% 51.7% 67.4%
FMA-SNOMED whole 94.6% 19.9% 32.9% 96.6% 15.1% 26.1%
SNOMED-NCI whole 86.7% 52.6% 65.5% 96.8% 40.6% 57.2%