Table 4 Evaluation results from the comparison with the automatically generated reference alignments with the Top-one Ranked Selector. The “Ref.” column indicates the number of mappings present in the the reference alignments
From: Improving the interoperability of biomedical ontologies with compound alignments
Ontology sets | Precision | Recall | F-measure | Ref. |
|---|---|---|---|---|
MP-CL-PATO | 24.5% | 24.3% | 24.4% | 474 |
MP-GO-PATO | 62.9% | 60.7% | 61.8% | 944 |
MP-NBO-PATO | 50.0% | 39.7% | 44.3% | 219 |
MP-UBERON-PATO | 55.2% | 46.8% | 50.7% | 1999 |
WBP-GO-PATO | 11.7% | 10.2% | 10.9% | 325 |
HP-FMA-PATO | 27.3% | 20.3% | 23.3% | 1893 |