Table 11 Comparing the structural validation of FCA-Map with the incoherence repairing of LogMap
From: Matching biomedical ontologies based on formal concept analysis
Matching task | MA-NCI | FMA-NCI | FMA-SNOMED | SNOMED-NCI | |
|---|---|---|---|---|---|
Input mappings | 1397 | 2893 | 7684 | 13761 | |
Validated anchors by FCA-Map | N | 1346 | 2824 | 7637 | 13231 |
| Â | P | 0.935 | 0.956 | 0.937 | 0.917 |
| Â | R | 0.830 | 0.917 | 0.803 | 0.665 |
| Â | F | 0.880 | 0.936 | 0.865 | 0.771 |
|  | Unsat. | 14 ↓11 | 272 ↓218 | 1848 ↓1836 | 1352 ↓947 |
Repaired anchors by LogMap | N | 1385 | 2709 | 6415 | 13129 |
| Â | P | 0.918 | 0.959 | 0.952 | 0.932 |
| Â | R | 0.838 | 0.859 | 0.678 | 0.627 |
| Â | F | 0.876 | 0.907 | 0.792 | 0.750 |
|  | Unsat. | 14 ↓0 | 272 ↓0 | 1848 ↓0 | 1352 ↓0 |
Validated anchors by FCA-Map and then repaired by LogMap | N | 1336 | 2662 | 6377 | 12435 |
| Â | P | 0.938 | 0.967 | 0.957 | 0.938 |
| Â | R | 0.827 | 0.851 | 0.678 | 0.619 |
| Â | F | 0.879 | 0.905 | 0.793 | 0.746 |
|  | Unsat. | 14 ↓11↓0 | 272 ↓218↓0 | 1848 ↓1836↓0 | 1352 ↓947↓0 |