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Table 1 Exemplifying the identification of genes/proteins mentioned within the 25 PubMed titles/abstracts: Terms from PubMed abstract/title from the small-annotated corpus (first column) mapped to UniProtKB ACs (second column) and their corresponding values for skos:altLabel annotation properties of the PxO protein classes (third column)

From: Deep learning meets ontologies: experiments to anchor the cardiovascular disease ontology in the biomedical literature

Term(s) from PubMed abstract/title

UniProtKB AC

skos:altLabel for PxO protein classes

α(1)-antitrypsin

alpha-1-antitrypsin

P01009

SERPINA1 (P01009; A1AT_HUMAN) Alpha-1-antitrypsin

annexin 4

P09525

ANXA4 (P09525; ANXA4_HUMAN) Annexin A4

superoxide dismutase 3

P08294

SOD3 (P08294; SODE_HUMAN) Extracellular superoxide dismutase [Cu-Zn]

OLR1

P78380

OLR1 (P78380; OLR1_HUMAN) Oxidized low-density lipoprotein receptor 1

glutathione transferase

P30711

GSTT1 (P30711; GSTT1_HUMAN) Glutathione S-transferase theta-1

FJX1

Q86VR8

FJX1 (Q86VR8; FJX1_HUMAN) Four-jointed box protein 1