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Table 6 Proposed algorithm’s performance in relation to the used synonymy information sources

From: Biomedical ontology alignment: an approach based on representation learning

System

Training data

MA - NCI

FMA - NCI

FMA - SNOMED

  

P

R

F1

P

R

F1

P

R

F1

SCBOW

SL

0.845

0.911

0.877

0.897

0.840

0.868

0.795

0.773

0.784

SCBOW

SL + AS

0.847

0.917

0.881

0.899

0.895

0.897

0.843

0.866

0.855

SCBOW + DAE(O)

SL

0.946

0.905

0.925

0.972

0.830

0.895

0.912

0.759

0.829

SCBOW + DAE(O)

SL + AS

0.968

0.913

0.94

0.976

0.892

0.932

0.931

0.856

0.892

  1. Note: SL: synonyms only from ConceptNet 5, BabelNet, and WikiSynonyms; AS: additional synonyms found in the ontologies to be matched
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Journal of Biomedical Semantics

ISSN: 2041-1480