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Table 6 Proposed algorithm’s performance in relation to the used synonymy information sources

From: Biomedical ontology alignment: an approach based on representation learning

System Training data MA - NCI FMA - NCI FMA - SNOMED
   P R F1 P R F1 P R F1
SCBOW SL 0.845 0.911 0.877 0.897 0.840 0.868 0.795 0.773 0.784
SCBOW SL + AS 0.847 0.917 0.881 0.899 0.895 0.897 0.843 0.866 0.855
SCBOW + DAE(O) SL 0.946 0.905 0.925 0.972 0.830 0.895 0.912 0.759 0.829
SCBOW + DAE(O) SL + AS 0.968 0.913 0.94 0.976 0.892 0.932 0.931 0.856 0.892
  1. Note: SL: synonyms only from ConceptNet 5, BabelNet, and WikiSynonyms; AS: additional synonyms found in the ontologies to be matched