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Fig. 1 | Journal of Biomedical Semantics

Fig. 1

From: Phenotype annotation with the ontology of microbial phenotypes (OMP)

Fig. 1

Phenotypes in the OMP wiki. a An Annotations table on a Strain page. Two annotations are shown. The interface calculates differences in the genotype and conditions for each annotation compared to the reference annotation. In the second row, the comparison is to a strain that is not isogenic, so multiple allele differences are shown where only one is likely to be causative. b Editing interface using TableEdit. This shows how an existing annotation can be edited. OMP and ECO term names are filled in from the IDs by a database lookup. Conditions are entered as multiple key-value pairs where allowed keys are selected from a pull-down menu. These include, ENVO term, temperature, pH, medium, and other. Extensions and Notes are entered as free text

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