TY - JOUR AU - Ashburner, M. AU - Ball, C. A. AU - Blake, J. A. AU - Botstein, D. AU - Butler, H. AU - Cherry, J. M. PY - 2000 DA - 2000// TI - Gene ontology: tool for the unification of biology. The Gene Ontology Consortium JO - Nat Genet VL - 25 UR - https://doi.org/10.1038/75556 DO - 10.1038/75556 ID - Ashburner2000 ER - TY - JOUR AU - Georgas, K. M. AU - Armstrong, J. AU - Keast, J. R. AU - Larkins, C. E. AU - McHugh, K. M. AU - Southard-Smith, E. M. PY - 2015 DA - 2015// TI - An illustrated anatomical ontology of the developing mouse lower urogenital tract JO - Development VL - 142 UR - https://doi.org/10.1242/dev.117903 DO - 10.1242/dev.117903 ID - Georgas2015 ER - TY - JOUR AU - Little, M. H. AU - Brennan, J. AU - Georgas, K. AU - Davies, J. A. AU - Davidson, D. R. AU - Baldock, R. A. PY - 2007 DA - 2007// TI - A high-resolution anatomical ontology of the developing murine genitourinary tract JO - Gene Expr Patterns VL - 7 UR - https://doi.org/10.1016/j.modgep.2007.03.002 DO - 10.1016/j.modgep.2007.03.002 ID - Little2007 ER - TY - JOUR AU - Swanson, L. W. PY - 2018 DA - 2018// TI - Brain maps 4.0-structure of the rat brain: an open access atlas with global nervous system nomenclature ontology and flatmaps JO - J Comp Neurol VL - 526 UR - https://doi.org/10.1002/cne.24381 DO - 10.1002/cne.24381 ID - Swanson2018 ER - TY - JOUR AU - Segerdell, E. AU - Ponferrada, V. G. AU - James-Zorn, C. AU - Burns, K. A. AU - Fortriede, J. D. AU - Dahdul, W. M. PY - 2013 DA - 2013// TI - Enhanced XAO: the ontology of Xenopus anatomy and development underpins more accurate annotation of gene expression and queries on Xenbase JO - J Biomed Semantics VL - 4 UR - https://doi.org/10.1186/2041-1480-4-31 DO - 10.1186/2041-1480-4-31 ID - Segerdell2013 ER - TY - JOUR AU - Brinkley, J. F. AU - Borromeo, C. AU - Clarkson, M. AU - Cox, T. C. AU - Cunningham, M. J. AU - Detwiler, L. T. PY - 2013 DA - 2013// TI - The ontology of craniofacial development and malformation for translational craniofacial research JO - Am J Med Genet C Semin Med Genet VL - 163C UR - https://doi.org/10.1002/ajmg.c.31377 DO - 10.1002/ajmg.c.31377 ID - Brinkley2013 ER - TY - JOUR AU - Herriges, M. AU - Morrisey, E. E. PY - 2014 DA - 2014// TI - Lung development: orchestrating the generation and regeneration of a complex organ JO - Development VL - 141 UR - https://doi.org/10.1242/dev.098186 DO - 10.1242/dev.098186 ID - Herriges2014 ER - TY - JOUR AU - Kimura, J. AU - Deutsch, G. H. PY - 2007 DA - 2007// TI - Key mechanisms of early lung development JO - Pediatr Dev Pathol VL - 10 UR - https://doi.org/10.2350/07-06-0290.1 DO - 10.2350/07-06-0290.1 ID - Kimura2007 ER - TY - JOUR AU - Maeda, Y. AU - Dave, V. AU - Whitsett, J. A. PY - 2007 DA - 2007// TI - Transcriptional control of lung morphogenesis JO - Physiol Rev VL - 87 UR - https://doi.org/10.1152/physrev.00028.2006 DO - 10.1152/physrev.00028.2006 ID - Maeda2007 ER - TY - JOUR AU - Warburton, D. AU - El-Hashash, A. AU - Carraro, G. AU - Tiozzo, C. AU - Sala, F. AU - Rogers, O. PY - 2010 DA - 2010// TI - Lung organogenesis JO - Curr Top Dev Biol VL - 90 UR - https://doi.org/10.1016/S0070-2153(10)90003-3 DO - 10.1016/S0070-2153(10)90003-3 ID - Warburton2010 ER - TY - JOUR AU - Chao, C. M. AU - Moiseenko, A. AU - Zimmer, K. P. AU - Bellusci, S. PY - 2016 DA - 2016// TI - Alveologenesis: key cellular players and fibroblast growth factor 10 signaling JO - Mol Cell Pediatr VL - 3 UR - https://doi.org/10.1186/s40348-016-0045-7 DO - 10.1186/s40348-016-0045-7 ID - Chao2016 ER - TY - JOUR AU - Hines, E. A. AU - Sun, X. PY - 2014 DA - 2014// TI - Tissue crosstalk in lung development JO - J Cell Biochem VL - 115 UR - https://doi.org/10.1002/jcb.24811 DO - 10.1002/jcb.24811 ID - Hines2014 ER - TY - JOUR AU - McCulley, D. AU - Wienhold, M. AU - Sun, X. PY - 2015 DA - 2015// TI - The pulmonary mesenchyme directs lung development JO - Curr Opin Genet Dev VL - 32 UR - https://doi.org/10.1016/j.gde.2015.01.011 DO - 10.1016/j.gde.2015.01.011 ID - McCulley2015 ER - TY - JOUR AU - Morrisey, E. E. AU - Cardoso, W. V. AU - Lane, R. H. AU - Rabinovitch, M. AU - Abman, S. H. AU - Ai, X. PY - 2013 DA - 2013// TI - Molecular determinants of lung development JO - Ann Am Thorac Soc VL - 10 UR - https://doi.org/10.1513/AnnalsATS.201207-036OT DO - 10.1513/AnnalsATS.201207-036OT ID - Morrisey2013 ER - TY - JOUR AU - Olave, N. AU - Lal, C. V. AU - Halloran, B. AU - Pandit, K. AU - Cuna, A. C. AU - Faye-Petersen, O. M. PY - 2016 DA - 2016// TI - Regulation of alveolar septation by microRNA-489 JO - Am J Physiol Lung Cell Mol Physiol VL - 310 UR - https://doi.org/10.1152/ajplung.00145.2015 DO - 10.1152/ajplung.00145.2015 ID - Olave2016 ER - TY - JOUR AU - Surate Solaligue, D. E. AU - Rodriguez-Castillo, J. A. AU - Ahlbrecht, K. AU - Morty, R. E. PY - 2017 DA - 2017// TI - Recent advances in our understanding of the mechanisms of late lung development and bronchopulmonary dysplasia JO - Am J Physiol Lung Cell Mol Physiol. VL - 313 UR - https://doi.org/10.1152/ajplung.00343.2017 DO - 10.1152/ajplung.00343.2017 ID - Surate Solaligue2017 ER - TY - JOUR AU - Schittny, J. C. PY - 2017 DA - 2017// TI - Development of the lung JO - Cell Tissue Res VL - 367 UR - https://doi.org/10.1007/s00441-016-2545-0 DO - 10.1007/s00441-016-2545-0 ID - Schittny2017 ER - TY - CHAP AU - Wert, S. E. ED - Polin, R. A. ED - Abman, S. H. ED - Benitz, W. E. ED - Rowitch, D. H. ED - Fox, W. W. PY - 2017 DA - 2017// TI - Normal and abnormal structural development of the lung BT - Fetal and neonatal physiology PB - Elsevier CY - Philadephila UR - https://doi.org/10.1016/B978-0-323-35214-7.00061-5 DO - 10.1016/B978-0-323-35214-7.00061-5 ID - Wert2017 ER - TY - JOUR AU - Alvira, C. M. PY - 2016 DA - 2016// TI - Aberrant Pulmonary Vascular Growth and Remodeling in Bronchopulmonary Dysplasia JO - Front Med (Lausanne) VL - 3 ID - Alvira2016 ER - TY - JOUR AU - Silva, D. M. AU - Nardiello, C. AU - Pozarska, A. AU - Morty, R. E. PY - 2015 DA - 2015// TI - Recent advances in the mechanisms of lung alveolarization and the pathogenesis of bronchopulmonary dysplasia JO - Am J Physiol Lung Cell Mol Physiol VL - 309 UR - https://doi.org/10.1152/ajplung.00268.2015 DO - 10.1152/ajplung.00268.2015 ID - Silva2015 ER - TY - JOUR AU - Lal, C. V. AU - Bhandari, V. AU - Ambalavanan, N. AU - Pammi, M. AU - Lal, C. V. AU - Wagner, B. D. PY - 2018 DA - 2018// TI - Genomics, microbiomics, proteomics, and metabolomics in bronchopulmonary dysplasia airway microbiome and development of bronchopulmonary dysplasia in preterm infants: A systematic review JO - Semin Perinatol VL - 42 UR - https://doi.org/10.1053/j.semperi.2018.09.004 DO - 10.1053/j.semperi.2018.09.004 ID - Lal2018 ER - TY - JOUR AU - Baguma-Nibasheka, M. AU - Gugic, D. AU - Saraga-Babic, M. AU - Kablar, B. PY - 2012 DA - 2012// TI - Role of skeletal muscle in lung development JO - Histol Histopathol VL - 27 ID - Baguma-Nibasheka2012 ER - TY - JOUR AU - Nardiello, C. AU - Mizikova, I. AU - Morty, R. E. PY - 2017 DA - 2017// TI - Looking ahead: where to next for animal models of bronchopulmonary dysplasia? JO - Cell Tissue Res VL - 367 UR - https://doi.org/10.1007/s00441-016-2534-3 DO - 10.1007/s00441-016-2534-3 ID - Nardiello2017 ER - TY - JOUR AU - Shapiro, S. D. PY - 2007 DA - 2007// TI - Transgenic and gene-targeted mice as models for chronic obstructive pulmonary disease JO - Eur Respir J VL - 29 UR - https://doi.org/10.1183/09031936.00087606 DO - 10.1183/09031936.00087606 ID - Shapiro2007 ER - TY - JOUR AU - Tashiro, J. AU - Rubio, G. A. AU - Limper, A. H. AU - Williams, K. AU - Elliot, S. J. AU - Ninou, I. PY - 2017 DA - 2017// TI - Exploring Animal Models That Resemble Idiopathic Pulmonary Fibrosis JO - Front Med (Lausanne) VL - 4 UR - https://doi.org/10.3389/fmed.2017.00118 DO - 10.3389/fmed.2017.00118 ID - Tashiro2017 ER - TY - JOUR AU - Wirsdorfer, F. AU - Jendrossek, V. PY - 2017 DA - 2017// TI - Modeling DNA damage-induced pneumopathy in mice: insight from danger signaling cascades JO - Radiat Oncol VL - 12 UR - https://doi.org/10.1186/s13014-017-0865-1 DO - 10.1186/s13014-017-0865-1 ID - Wirsdorfer2017 ER - TY - JOUR AU - Rock, J. R. AU - Randell, S. H. AU - Hogan, B. L. PY - 2010 DA - 2010// TI - Airway basal stem cells: a perspective on their roles in epithelial homeostasis and remodeling JO - Dis Model Mech VL - 3 UR - https://doi.org/10.1242/dmm.006031 DO - 10.1242/dmm.006031 ID - Rock2010 ER - TY - CHAP AU - Suarez, C. AU - Dintzis, S. AU - Frevert, C. ED - Treuting, P. M. PY - 2012 DA - 2012// TI - Respiratory BT - Comparative anatomy and histology: A mouse and human atlas PB - Elsevier CY - London ID - Suarez2012 ER - TY - JOUR AU - Tyler, W. S. PY - 1983 DA - 1983// TI - Comparative subgross anatomy of lungs. Pleuras, interlobular septa, and distal airways JO - Am Rev Respir Dis VL - 128 ID - Tyler1983 ER - TY - CHAP AU - Burri, P. H. ED - McDonald, J. A. PY - 1997 DA - 1997// TI - Structural aspects of prenatal and postnatal development and growth of the lung BT - Lung growth and development. 100 PB - Francis CY - New York ID - Burri1997 ER - TY - JOUR AU - Ochs, M. AU - Nyengaard, J. R. AU - Jung, A. AU - Knudsen, L. AU - Voigt, M. AU - Wahlers, T. PY - 2004 DA - 2004// TI - The number of alveoli in the human lung JO - Am J Respir Crit Care Med VL - 169 UR - https://doi.org/10.1164/rccm.200308-1107OC DO - 10.1164/rccm.200308-1107OC ID - Ochs2004 ER - TY - JOUR AU - Pozarska, A. AU - Rodriguez-Castillo, J. A. AU - Surate Solaligue, D. E. AU - Ntokou, A. AU - Rath, P. AU - Mizikova, I. PY - 2017 DA - 2017// TI - Stereological monitoring of mouse lung alveolarization from the early postnatal period to adulthood JO - Am J Physiol Lung Cell Mol Physiol. VL - 312 UR - https://doi.org/10.1152/ajplung.00492.2016 DO - 10.1152/ajplung.00492.2016 ID - Pozarska2017 ER - TY - JOUR AU - Have-Opbroek, A. A. PY - 1981 DA - 1981// TI - The development of the lung in mammals: an analysis of concepts and findings JO - Am J Anat VL - 162 UR - https://doi.org/10.1002/aja.1001620303 DO - 10.1002/aja.1001620303 ID - Have-Opbroek1981 ER - TY - JOUR AU - Burri, P. H. PY - 1984 DA - 1984// TI - Fetal and postnatal development of the lung JO - Annu Rev Physiol VL - 46 UR - https://doi.org/10.1146/annurev.ph.46.030184.003153 DO - 10.1146/annurev.ph.46.030184.003153 ID - Burri1984 ER - TY - JOUR AU - Burri, P. H. PY - 2006 DA - 2006// TI - Structural aspects of postnatal lung development - alveolar formation and growth JO - Biol Neonate VL - 89 UR - https://doi.org/10.1159/000092868 DO - 10.1159/000092868 ID - Burri2006 ER - TY - JOUR AU - Mund, S. I. AU - Stampanoni, M. AU - Schittny, J. C. PY - 2008 DA - 2008// TI - Developmental alveolarization of the mouse lung JO - Dev Dyn VL - 237 UR - https://doi.org/10.1002/dvdy.21633 DO - 10.1002/dvdy.21633 ID - Mund2008 ER - TY - JOUR AU - Zeltner, T. B. AU - Caduff, J. H. AU - Gehr, P. AU - Pfenninger, J. AU - Burri, P. H. PY - 1987 DA - 1987// TI - The postnatal development and growth of the human lung JO - I Morphometry Respir Physiol VL - 67 UR - https://doi.org/10.1016/0034-5687(87)90057-0 DO - 10.1016/0034-5687(87)90057-0 ID - Zeltner1987 ER - TY - JOUR AU - Hislop, A. A. PY - 2002 DA - 2002// TI - Airway and blood vessel interaction during lung development JO - J Anat VL - 201 UR - https://doi.org/10.1046/j.1469-7580.2002.00097.x DO - 10.1046/j.1469-7580.2002.00097.x ID - Hislop2002 ER - TY - JOUR AU - Pringle, K. C. PY - 1986 DA - 1986// TI - Human fetal lung development and related animal models JO - Clin Obstet Gynecol VL - 29 UR - https://doi.org/10.1097/00003081-198609000-00006 DO - 10.1097/00003081-198609000-00006 ID - Pringle1986 ER - TY - JOUR AU - Zoetis, T. AU - Hurtt, M. E. PY - 2003 DA - 2003// TI - Species comparison of lung development JO - Birth Defects Res B Dev Reprod Toxicol VL - 68 UR - https://doi.org/10.1002/bdrb.10014 DO - 10.1002/bdrb.10014 ID - Zoetis2003 ER - TY - JOUR AU - Langston, C. AU - Kida, K. AU - Reed, M. AU - Thurlbeck, W. M. PY - 1984 DA - 1984// TI - Human lung growth in late gestation and in the neonate JO - Am Rev Respir Dis VL - 129 ID - Langston1984 ER - TY - JOUR AU - Thurlbeck, W. M. PY - 1975 DA - 1975// TI - Postnatal growth and development of the lung JO - Am Rev Respir Dis VL - 111 ID - Thurlbeck1975 ER - TY - JOUR AU - Amy, R. W. AU - Bowes, D. AU - Burri, P. H. AU - Haines, J. AU - Thurlbeck, W. M. PY - 1977 DA - 1977// TI - Postnatal growth of the mouse lung JO - J Anat VL - 124 ID - Amy1977 ER - TY - JOUR AU - Hislop, A. A. AU - Wigglesworth, J. S. AU - Desai, R. PY - 1986 DA - 1986// TI - Alveolar development in the human fetus and infant JO - Early Hum Dev VL - 13 UR - https://doi.org/10.1016/0378-3782(86)90092-7 DO - 10.1016/0378-3782(86)90092-7 ID - Hislop1986 ER - TY - JOUR AU - Ardini-Poleske, M. E. AU - Clark, R. F. AU - Ansong, C. AU - Carson, J. P. AU - Corley, R. A. AU - Deutsch, G. H. PY - 2017 DA - 2017// TI - LungMAP: the molecular atlas of lung development program JO - Am J Physiol Lung Cell Mol Physiol VL - 313 UR - https://doi.org/10.1152/ajplung.00139.2017 DO - 10.1152/ajplung.00139.2017 ID - Ardini-Poleske2017 ER - TY - STD TI - Krzyanowski MC, Levy J, Paige GP, Gaddis NC, Clark RF. Using semantic web technologies to power LungMAP, a molecular data repository. Proceeding SBD '17 Proceedings of The International Workshop on Semantic Big Data Article No 8 2017; Chicago, IL. New York ACM; 2017. ID - ref46 ER - TY - JOUR AU - Bandyopadhyay, G. AU - Huyck, H. L. AU - Misra, R. S. AU - Bhattacharya, S. AU - Wang, Q. AU - Mereness, J. PY - 2018 DA - 2018// TI - Dissociation, cellular isolation, and initial molecular characterization of neonatal and pediatric human lung tissues JO - Am J Physiol Lung Cell Mol Physiol VL - 315 UR - https://doi.org/10.1152/ajplung.00041.2018 DO - 10.1152/ajplung.00041.2018 ID - Bandyopadhyay2018 ER - TY - JOUR AU - Moghieb, A. AU - Clair, G. AU - Mitchell, H. D. AU - Kitzmiller, J. AU - Zink, E. M. AU - Kim, Y. M. PY - 2018 DA - 2018// TI - Time-resolved proteome profiling of normal lung development JO - Am J Physiol Lung Cell Mol Physiol VL - 315 UR - https://doi.org/10.1152/ajplung.00316.2017 DO - 10.1152/ajplung.00316.2017 ID - Moghieb2018 ER - TY - JOUR AU - Guo, M. AU - Du, Y. AU - Gokey, J. J. AU - Ray, S. AU - Bell, S. M. AU - Adam, M. PY - 2019 DA - 2019// TI - Single cell RNA analysis identifies cellular heterogeneity and adaptive responses of the lung at birth JO - Nat Commun VL - 10 UR - https://doi.org/10.1038/s41467-018-07770-1 DO - 10.1038/s41467-018-07770-1 ID - Guo2019 ER - TY - JOUR AU - Ljungberg, M. C. AU - Sadi, M. AU - Wang, Y. AU - Aronow, B. J. AU - Xu, Y. AU - Kao, R. J. PY - 2019 DA - 2019// TI - Spatial distribution of marker gene activity in the mouse lung during alveolarization JO - Data Brief VL - 22 UR - https://doi.org/10.1016/j.dib.2018.10.150 DO - 10.1016/j.dib.2018.10.150 ID - Ljungberg2019 ER - TY - JOUR AU - Endale, M. AU - Ahlfeld, S. AU - Bao, E. AU - Chen, X. AU - Green, J. AU - Bess, Z. PY - 2017 DA - 2017// TI - Temporal, spatial, and phenotypical changes of PDGFRalpha expressing fibroblasts during late lung development JO - Dev Biol VL - 425 UR - https://doi.org/10.1016/j.ydbio.2017.03.020 DO - 10.1016/j.ydbio.2017.03.020 ID - Endale2017 ER - TY - JOUR AU - Musen, M. A. AU - Protege, T. PY - 2015 DA - 2015// TI - The Protege project: A look Back and a look forward JO - AI Matters VL - 1 UR - https://doi.org/10.1145/2757001.2757003 DO - 10.1145/2757001.2757003 ID - Musen2015 ER - TY - STD TI - Noy NF, Crubezy M, Fergerson RW, Knublauch H, Tu SW, Vendetti J, et al. Protege-2000: an open-source ontology-development and knowledge-acquisition environment. AMIA Annu Symp Proc. 2003;953. ID - ref53 ER - TY - JOUR AU - Hayamizu, T. F. AU - Wicks, M. N. AU - Davidson, D. R. AU - Burger, A. AU - Ringwald, M. AU - Baldock, R. A. PY - 2013 DA - 2013// TI - EMAP/EMAPA ontology of mouse developmental anatomy: 2013 update JO - J Biomed Semantics VL - 4 UR - https://doi.org/10.1186/2041-1480-4-15 DO - 10.1186/2041-1480-4-15 ID - Hayamizu2013 ER - TY - JOUR AU - Hayamizu, T. F. AU - Baldock, R. A. AU - Ringwald, M. PY - 2015 DA - 2015// TI - Mouse anatomy ontologies: enhancements and tools for exploring and integrating biomedical data JO - Mamm Genome VL - 26 UR - https://doi.org/10.1007/s00335-015-9584-9 DO - 10.1007/s00335-015-9584-9 ID - Hayamizu2015 ER - TY - JOUR AU - Hayamizu, T. F. AU - Mangan, M. AU - Corradi, J. P. AU - Kadin, J. A. AU - Ringwald, M. PY - 2005 DA - 2005// TI - The adult mouse anatomical dictionary: a tool for annotating and integrating data JO - Genome Biol VL - 6 UR - https://doi.org/10.1186/gb-2005-6-3-r29 DO - 10.1186/gb-2005-6-3-r29 ID - Hayamizu2005 ER - TY - JOUR AU - Rosse, C. AU - Mejino, J. L. PY - 2003 DA - 2003// TI - A reference ontology for biomedical informatics: the foundational model of anatomy JO - J Biomed Inform VL - 36 UR - https://doi.org/10.1016/j.jbi.2003.11.007 DO - 10.1016/j.jbi.2003.11.007 ID - Rosse2003 ER - TY - JOUR AU - Mungall, C. J. AU - Torniai, C. AU - Gkoutos, G. V. AU - Lewis, S. E. AU - Haendel, M. A. PY - 2012 DA - 2012// TI - Uberon, an integrative multi-species anatomy ontology JO - Genome Biol VL - 13 UR - https://doi.org/10.1186/gb-2012-13-1-r5 DO - 10.1186/gb-2012-13-1-r5 ID - Mungall2012 ER - TY - JOUR AU - Diehl, A. D. AU - Meehan, T. F. AU - Bradford, Y. M. AU - Brush, M. H. AU - Dahdul, W. M. AU - Dougall, D. S. PY - 2016 DA - 2016// TI - The cell ontology 2016: enhanced content, modularization, and ontology interoperability JO - J Biomed Semantics VL - 7 UR - https://doi.org/10.1186/s13326-016-0088-7 DO - 10.1186/s13326-016-0088-7 ID - Diehl2016 ER - TY - JOUR AU - Meehan, T. F. AU - Masci, A. M. AU - Abdulla, A. AU - Cowell, L. G. AU - Blake, J. A. AU - Mungall, C. J. PY - 2011 DA - 2011// TI - Logical development of the cell ontology JO - BMC Bioinformatics VL - 12 UR - https://doi.org/10.1186/1471-2105-12-6 DO - 10.1186/1471-2105-12-6 ID - Meehan2011 ER - TY - JOUR AU - Jeffery, P. K. AU - Gaillard, D. AU - Moret, S. PY - 1992 DA - 1992// TI - Human airway secretory cells during development and in mature airway epithelium JO - Eur Respir J VL - 5 ID - Jeffery1992 ER - TY - JOUR AU - Jeffrey, P. K. PY - 1998 DA - 1998// TI - The development of large and small airways JO - Am J Respir Crit Care Med VL - 157 UR - https://doi.org/10.1164/ajrccm.157.5.rsaa-1 DO - 10.1164/ajrccm.157.5.rsaa-1 ID - Jeffrey1998 ER - TY - CHAP AU - LeCras, T. D. AU - Rabinovitch, M. ED - Jobe, A. H. ED - Whitsett, J. A. ED - Abman, S. H. PY - 2016 DA - 2016// TI - Pulomonary vascular development BT - Fetal and neonatal lung development: clinical correlates and Technologies for the Future PB - Cambridge University Press CY - New York ID - LeCras2016 ER - TY - JOUR AU - Sparrow, M. P. AU - Lamb, J. P. PY - 2003 DA - 2003// TI - Ontogeny of airway smooth muscle: structure, innervation, myogenesis and function in the fetal lung JO - Respir Physiol Neurobiol VL - 137 UR - https://doi.org/10.1016/S1569-9048(03)00159-9 DO - 10.1016/S1569-9048(03)00159-9 ID - Sparrow2003 ER - TY - JOUR AU - Sparrow, M. P. AU - Weichselbaum, M. AU - McCray, P. B. PY - 1999 DA - 1999// TI - Development of the innervation and airway smooth muscle in human fetal lung JO - Am J Respir Cell Mol Biol VL - 20 UR - https://doi.org/10.1165/ajrcmb.20.4.3385 DO - 10.1165/ajrcmb.20.4.3385 ID - Sparrow1999 ER - TY - JOUR AU - Tollet, J. AU - Everett, A. W. AU - Sparrow, M. P. PY - 2001 DA - 2001// TI - Spatial and temporal distribution of nerves, ganglia, and smooth muscle during the early pseudoglandular stage of fetal mouse lung development JO - Dev Dyn VL - 221 UR - https://doi.org/10.1002/dvdy.1124 DO - 10.1002/dvdy.1124 ID - Tollet2001 ER - TY - CHAP AU - Albertine, K. H. ED - Mason, R. J. ED - Broaddus, V. C. ED - Martin, T. E. ED - King, T. E. ED - Schraufnagel, D. E. ED - Murray, J. F. PY - 2010 DA - 2010// TI - Anatomy of The Lungs BT - Murry & Nadel’s Textbook of Respiratory Medicine PB - Saunders (Elsevoer Inc.) CY - Phiiladelphia UR - https://doi.org/10.1016/B978-1-4160-4710-0.00001-8 DO - 10.1016/B978-1-4160-4710-0.00001-8 ID - Albertine2010 ER - TY - JOUR AU - Breeze, R. G. AU - Wheeldon, E. B. PY - 1977 DA - 1977// TI - The cells of the pulmonary airways JO - Am Rev Respir Dis VL - 116 UR - https://doi.org/10.1164/arrd.1977.116.4.705 DO - 10.1164/arrd.1977.116.4.705 ID - Breeze1977 ER - TY - JOUR AU - Crapo, J. D. AU - Barry, B. E. AU - Gehr, P. AU - Bachofen, M. AU - Weibel, E. R. PY - 1982 DA - 1982// TI - Cell number and cell characteristics of the normal human lung JO - Am Rev Respir Dis VL - 126 ID - Crapo1982 ER - TY - JOUR AU - Franks, T. J. AU - Colby, T. V. AU - Travis, W. D. AU - Tuder, R. M. AU - Reynolds, H. Y. AU - Brody, A. R. PY - 2008 DA - 2008// TI - Resident cellular components of the human lung: current knowledge and goals for research on cell phenotyping and function JO - Proc Am Thorac Soc VL - 5 UR - https://doi.org/10.1513/pats.200803-025HR DO - 10.1513/pats.200803-025HR ID - Franks2008 ER - TY - CHAP AU - Sorokin, S. ED - Weiss, L. PY - 1988 DA - 1988// TI - The respiratory system BT - Cell and tissue biology, A textbook of histology PB - Schwarzenberg CY - Baltimore ID - Sorokin1988 ER - TY - STD TI - Ding J, Aronow BJ, Kaminski N, Kitzmiller J, Whitsett JA, Bar-Joseph Z. Reconstructing differentiation networks and their regulation from time series single-cell expression data. Genome Res. 2018;28:383–95. ID - ref72 ER - TY - JOUR AU - Guo, M. AU - Bao, E. L. AU - Wagner, M. AU - Whitsett, J. A. AU - Xu, Y. PY - 2017 DA - 2017// TI - SLICE: determining cell differentiation and lineage based on single cell entropy JO - Nucleic Acids Res VL - 45 UR - https://doi.org/10.1093/nar/gkw1061 DO - 10.1093/nar/gkw1061 ID - Guo2017 ER - TY - JOUR AU - Guo, M. AU - Wang, H. AU - Potter, S. S. AU - Whitsett, J. A. AU - Xu, Y. PY - 2015 DA - 2015// TI - SINCERA: A pipeline for single-cell RNA-Seq profiling analysis JO - PLoS Comput Biol VL - 11 UR - https://doi.org/10.1371/journal.pcbi.1004575 DO - 10.1371/journal.pcbi.1004575 ID - Guo2015 ER - TY - JOUR AU - Trapnell, C. PY - 2015 DA - 2015// TI - Defining cell types and states with single-cell genomics JO - Genome Res VL - 25 UR - https://doi.org/10.1101/gr.190595.115 DO - 10.1101/gr.190595.115 ID - Trapnell2015 ER - TY - JOUR AU - Bard, J. B. PY - 2005 DA - 2005// TI - Anatomics: the intersection of anatomy and bioinformatics JO - J Anat VL - 206 UR - https://doi.org/10.1111/j.0021-8782.2005.00376.x DO - 10.1111/j.0021-8782.2005.00376.x ID - Bard2005 ER - TY - JOUR AU - Smith, B. AU - Ceusters, W. AU - Klagges, B. AU - Kohler, J. AU - Kumar, A. AU - Lomax, J. PY - 2005 DA - 2005// TI - Relations in biomedical ontologies JO - Genome Biol VL - 6 UR - https://doi.org/10.1186/gb-2005-6-5-r46 DO - 10.1186/gb-2005-6-5-r46 ID - Smith2005 ER - TY - JOUR AU - Musen, M. A. AU - Noy, N. F. AU - Shah, N. H. AU - Whetzel, P. L. AU - Chute, C. G. AU - Story, M. A. PY - 2012 DA - 2012// TI - The National Center for biomedical ontology JO - J Am Med Inform Assoc VL - 19 UR - https://doi.org/10.1136/amiajnl-2011-000523 DO - 10.1136/amiajnl-2011-000523 ID - Musen2012 ER - TY - JOUR AU - Whetzel, P. L. AU - Noy, N. F. AU - Shah, N. H. AU - Alexander, P. R. AU - Nyulas, C. AU - Tudorache, T. PY - 2011 DA - 2011// TI - BioPortal: enhanced functionality via new web services from the National Center for biomedical ontology to access and use ontologies in software applications JO - Nucleic Acids Res VL - 39 UR - https://doi.org/10.1093/nar/gkr469 DO - 10.1093/nar/gkr469 ID - Whetzel2011 ER - TY - JOUR AU - Bard, J. PY - 2012 DA - 2012// TI - A new ontology (structured hierarchy) of human developmental anatomy for the first 7 weeks (Carnegie stages 1-20) JO - J Anat VL - 221 UR - https://doi.org/10.1111/j.1469-7580.2012.01566.x DO - 10.1111/j.1469-7580.2012.01566.x ID - Bard2012 ER - TY - STD TI - Weibel ER, Gomez DM. Architecture of the human lung. Use of quantitative methods establishes fundamental relations between size and number of lung structures. Science. 1962;137:577–85. ID - ref81 ER - TY - JOUR AU - Weibel, E. R. PY - 1963 DA - 1963// TI - Principles and methods for the morphometric study of the lung and other organs JO - Lab Investig VL - 12 ID - Weibel1963 ER - TY - JOUR AU - Bucher, U. AU - Reid, L. PY - 1961 DA - 1961// TI - Development of the intrasegmental bronchial tree: the pattern of branching and development of cartilage at various stages of intra-uterine life JO - Thorax VL - 16 UR - https://doi.org/10.1136/thx.16.3.207 DO - 10.1136/thx.16.3.207 ID - Bucher1961 ER - TY - STD TI - Irvin CG, Bates JHT. Measuring the lung function in the mouse: the challenge of size. Respir Res. 2003;4:4. ID - ref84 ER - TY - STD TI - Blanc PCK, Pouchin P, Azaïs JM, Blanchon L, Gallot D, Sapin V. A role for mesenchyme dynamics in mouse lung branching morphogenesis. PLoS One. 2012;7:(7):e41643. ID - ref85 ER - TY - JOUR AU - Metzger, R. J. AU - Klein, O. D. AU - Martin, G. R. AU - Krasnow, M. A. PY - 2008 DA - 2008// TI - The branching programme of mouse lung development JO - Nature VL - 453 UR - https://doi.org/10.1038/nature07005 DO - 10.1038/nature07005 ID - Metzger2008 ER - TY - CHAP AU - Reynolds, S. D. AU - Pinkerton, K. E. AU - A.T. ED - Parent, R. A. PY - 2015 DA - 2015// TI - M. Epithelial cells of trachea and bronchi BT - Comparative biology of the Normal lung PB - Academic Press CY - San Diego UR - https://doi.org/10.1016/B978-0-12-404577-4.00006-0 DO - 10.1016/B978-0-12-404577-4.00006-0 ID - Reynolds2015 ER - TY - CHAP AU - Plopper, C. G. AU - D.M. H. ED - Parent, R. A. PY - 2015 DA - 2015// TI - Epithelial cells of the bronchiole BT - Comparative biology of the Normal lung PB - Academic Press CY - San Diego UR - https://doi.org/10.1016/B978-0-12-404577-4.00007-2 DO - 10.1016/B978-0-12-404577-4.00007-2 ID - Plopper2015 ER - TY - JOUR AU - Boers, J. E. AU - Ambergen, A. W. AU - Thunnissen, F. B. PY - 1999 DA - 1999// TI - Number and proliferation of clara cells in normal human airway epithelium JO - Am J Respir Crit Care Med VL - 159 UR - https://doi.org/10.1164/ajrccm.159.5.9806044 DO - 10.1164/ajrccm.159.5.9806044 ID - Boers1999 ER - TY - JOUR AU - Plopper, C. G. AU - Hyde, D. M. PY - 2008 DA - 2008// TI - The non-human primate as a model for studying COPD and asthma JO - Pulm Pharmacol Ther VL - 21 UR - https://doi.org/10.1016/j.pupt.2008.01.008 DO - 10.1016/j.pupt.2008.01.008 ID - Plopper2008 ER - TY - JOUR AU - Berend, N. AU - Rynell, A. C. AU - Ward, H. E. PY - 1991 DA - 1991// TI - Structure of a human pulmonary acinus JO - Thorax VL - 46 UR - https://doi.org/10.1136/thx.46.2.117 DO - 10.1136/thx.46.2.117 ID - Berend1991 ER - TY - JOUR AU - Du, Y. AU - Guo, M. AU - Whitsett, J. A. AU - Xu, Y. PY - 2015 DA - 2015// TI - 'LungGENS': a web-based tool for mapping single-cell gene expression in the developing lung JO - Thorax VL - 70 UR - https://doi.org/10.1136/thoraxjnl-2015-207035 DO - 10.1136/thoraxjnl-2015-207035 ID - Du2015 ER - TY - JOUR AU - Du, Y. AU - Kitzmiller, J. A. AU - Sridharan, A. AU - Perl, A. K. AU - Bridges, J. P. AU - Misra, R. S. PY - 2017 DA - 2017// TI - Lung gene expression analysis (LGEA): an integrative web portal for comprehensive gene expression data analysis in lung development JO - Thorax VL - 72 UR - https://doi.org/10.1136/thoraxjnl-2016-209598 DO - 10.1136/thoraxjnl-2016-209598 ID - Du2017 ER - TY - JOUR AU - Chen, J. AU - Bardes, E. E. AU - Aronow, B. J. AU - Jegga, A. G. PY - 2009 DA - 2009// TI - ToppGene suite for gene list enrichment analysis and candidate gene prioritization JO - Nucleic Acids Res VL - 37 UR - https://doi.org/10.1093/nar/gkp427 DO - 10.1093/nar/gkp427 ID - Chen2009 ER - TY - JOUR AU - Kaimal, V. AU - Bardes, E. E. AU - Tabar, S. C. AU - Jegga, A. G. AU - Aronow, B. J. PY - 2010 DA - 2010// TI - ToppCluster: a multiple gene list feature analyzer for comparative enrichment clustering and network-based dissection of biological systems JO - Nucleic Acids Res VL - 38 UR - https://doi.org/10.1093/nar/gkq418 DO - 10.1093/nar/gkq418 ID - Kaimal2010 ER - TY - JOUR AU - Desai, T. J. AU - Brownfield, D. G. AU - Krasnow, M. A. PY - 2014 DA - 2014// TI - Alveolar progenitor and stem cells in lung development, renewal and cancer JO - Nature VL - 507 UR - https://doi.org/10.1038/nature12930 DO - 10.1038/nature12930 ID - Desai2014 ER - TY - JOUR AU - Jain, R. AU - Barkauskas, C. E. AU - Takeda, N. AU - Bowie, E. J. AU - Aghajanian, H. AU - Wang, Q. PY - 2015 DA - 2015// TI - Plasticity of Hopx(+) type I alveolar cells to regenerate type II cells in the lung JO - Nat Commun VL - 6 UR - https://doi.org/10.1038/ncomms7727 DO - 10.1038/ncomms7727 ID - Jain2015 ER - TY - JOUR AU - Treutlein, B. AU - Brownfield, D. G. AU - Wu, A. R. AU - Neff, N. F. AU - Mantalas, G. L. AU - Espinoza, F. H. PY - 2014 DA - 2014// TI - Reconstructing lineage hierarchies of the distal lung epithelium using single-cell RNA-seq JO - Nature VL - 509 UR - https://doi.org/10.1038/nature13173 DO - 10.1038/nature13173 ID - Treutlein2014 ER -