Skip to main content

Table 9 Extension of IDO-COVID-19 from CIDO

From: The Infectious Disease Ontology in the age of COVID-19

Term Definition
COVID-19 Coronavirus disease inhering in a SARS-CoV-2 disorder.
COVID-19 disease course Coronavirus disease course that is the realization of some COVID-19 disease and has participant SARS-CoV-2.
pathogenesis (GO) Process that generates the ability of a pathogen to induce a disorder in an organism.
coronavirus pathogenesis (CIDO) Virus pathogenesis that is the realization of an infectious disposition inhering in a coronavirus or coronavirus population, having at least the process parts: (1) pathogen transmission, (2) establishment of localization in host, (3) process of establishing an infection, and (4) appearance of a virus disorder.
SARS-CoV-2 pathogenesis Coronavirus pathogenesis process that is the realization of an infectious disposition inhering in SARS-CoV-2 or a SARS-CoV-2 population, having at least the proper process parts: (1) pathogen transmission, (2) establishment of localization in host, (3) process of establishing an infection, and (4) appearance of a virus disorder.
replication (IDO Core) Production process in which a participant creates a copy of itself.
virus replication (VIDO) Replication process in which a virus containing some portion of genetic material inherited from a parent virus is replicated.
generative stage (IDO Core) Temporal subdivision of a developmental process.
virus generative stage (VIDO) Infectious structure generative stage that is a temporal subdivision of a virus developmental process.
virus attachment stage (VIDO) Virus generative stage during which a virion protein binds to molecules on the host surface or host cell surface projection.
virus penetration stage (VIDO) Virus generative stage during which a virion or viral nucleic acid breaches the barriers of a host.
SARS-CoV-2 attachment stage Virus attachment stage during which SARS-CoV-2 bonds with a host cell.
SARS-CoV-2 penetration stage Virus penetration stage during which SARS-CoV-2 penetrates a host cell.
SARS-CoV-2 adhesion susceptible cell Virus adhesion susceptible cell with a functional receptor part bearing an adhesion disposition realized in a SARS-CoV-2 attachment stage.
SARS-CoV-2 penetration disposition Virus penetration disposition borne by a functional receptor complex that is the disposition to participate in a SARS-CoV-2 penetration process.
negative regulation of SARS-CoV-2 attachment Negative regulation of coronavirus replication process that stops, prevents, or reduces the frequency of some SARS-CoV-2 attachment stage.
negative regulation of SARS-CoV-2 penetration Negative regulation of coronavirus replication that stops, prevents, or reduces the frequency of some SARS-CoV-2 penetration stage.