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Table 6 eScience-compliant data and metadata standards

From: Anatomy and the type concept in biology show that ontologies must be adapted to the diagnostic needs of research

Standard

Guiding question

Requirements

Solution

Terminology

 Concept

What is the meaning of a concept? What do we know of the corresponding kind?

Must provide a human-readable and machine-actionable ontological definition and thus unambiguous meaning (i.e., semantic value) to a term. Must contribute to a person’s semantic inferential competence.

ontology terms, controlled vocabularies, Aristotelian definitions, essentialistic classes, cluster classes, fuzzy sets, exemplars

 Nomenclatural

Which words or symbols are used for referring to a specific kind?

Must provide an unambiguous link between term (i.e., word/symbol) and concept, giving meaning to terms. Must contribute to a person’s output inferential competence.

unique identifiers such as URIs, preferred labels, synonyms

 Diagnostic

How can I recognize and identify instances of a kind? What does an instance of a kind look like?

Must provide human-readable and machine-actionable empirical recognition criteria (i.e., operational definitions) that enable identifying instances of a kind. Must contribute to a person’s naming and application referential competence.

ontology terms, controlled vocabularies, Aristotelian definitions, essentialistic classes, cluster classes, fuzzy sets, exemplars

Assertion

 Format

Which syntax and file format must be used?

Must provide a format and a syntax that enables machine- actionability and that guarantees the comparability of data and metadata. The standard also requires applications that can translate data and metadata into a human-readable version.

RDF/OWL and a semantic data model, combined with tools for human-readability

 Content

Which information is relevant?

Must provide a basic categorization and classification of contents and corresponding schemata for documenting them.

domain-specific semantic data model