From: Performance assessment of ontology matching systems for FAIR data
All systems (vote ≥ 2) | All systems (vote = 3) | AML 2.0 + FCA-Map | AML 2.0 + LogMap 2.0 | FCA-Map + LogMap 2.0 | |
---|---|---|---|---|---|
NCIt - SNOMED CT | |||||
F1-score BioPortal (top-level hierarchy) | 0.80 (0.81) | 0.87 (0.87) | 0.90 (0.90) | 0.87 (0.87) | 0.77 (0.78) |
F1-score UMLS (top-level hierarchy) | 0.63 (0.65) | 0.59 (0.59) | 0.59 (0.59) | 0.59 (0.59) | 0.63 (0.64) |
NCIt - ORDO | |||||
F1-score BioPortal (top-level hierarchy) | 0.71 (0.71) | 0.79 (0.79) | 0.80 (0.80) | 0.73 (0.73) | 0.76 (0.76) |
F1-score UMLS (top-level hierarchy) | 0.53 (0.54) | 0.53 (0.53) | 0.53 (0.53) | 0.55 (0.55) | 0.51 (0.52) |
ORDO - SNOMED CT | |||||
F1-score BioPortal (top-level hierarchy) | 0.44 (0.44) | 0.49 (0.49) | 0.50 (0.50) | 0.44 (0.44) | 0.47 (0.47) |
F1-score UMLS (top-level hierarchy) | 0.56 (0.57) | 0.51 (0.51) | 0.52 (0.52) | 0.55 (0.56) | 0.52 (0.52) |