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Table 11 Consensus alignment results. Shown are the F1-scores for vote-based consensus alignments. The number of votes represents how many systems selected the same mapping. F1-scores when corrected for positive mappings with an incorrect top-level hierarchy are shown in parenthesis. AgreementMakerLight 2.0 is abbreviated as AML 2.0

From: Performance assessment of ontology matching systems for FAIR data

 

All systems (vote ≥ 2)

All systems (vote = 3)

AML 2.0 + FCA-Map

AML 2.0 + LogMap 2.0

FCA-Map + LogMap 2.0

NCIt - SNOMED CT

     

F1-score BioPortal (top-level hierarchy)

0.80 (0.81)

0.87 (0.87)

0.90 (0.90)

0.87 (0.87)

0.77 (0.78)

F1-score UMLS (top-level hierarchy)

0.63 (0.65)

0.59 (0.59)

0.59 (0.59)

0.59 (0.59)

0.63 (0.64)

NCIt - ORDO

     

F1-score BioPortal (top-level hierarchy)

0.71 (0.71)

0.79 (0.79)

0.80 (0.80)

0.73 (0.73)

0.76 (0.76)

F1-score UMLS (top-level hierarchy)

0.53 (0.54)

0.53 (0.53)

0.53 (0.53)

0.55 (0.55)

0.51 (0.52)

ORDO - SNOMED CT

     

F1-score BioPortal (top-level hierarchy)

0.44 (0.44)

0.49 (0.49)

0.50 (0.50)

0.44 (0.44)

0.47 (0.47)

F1-score UMLS (top-level hierarchy)

0.56 (0.57)

0.51 (0.51)

0.52 (0.52)

0.55 (0.56)

0.52 (0.52)